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QGH71233.1

Arc-Vir

MN539721__QGH71233.1__X__00002

Identity

Accession:
MN539721 ↗
Protein ID:
QGH71233.1 ↗
Kingdom:
archaea

Quality

71.4 mean pLDDT

Taxonomy

Fuselloviridae› Sulfolobus_super-elliptical_virus

TaxID: 2655037

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-131
PDB
Domain cluster: rep: LC208019__BBC20937.1__X__00011__D7-106
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hjmA01 1.20.120.460 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like 0.80 50.0 5.81e-01 86.3% 86.0%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.70 44.0 5.45e-01 85.5% 100.0%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.69 42.0 5.21e-01 82.9% 97.3%
2l1lB00 1.20.1440.250 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.67 40.0 3.89e-01 83.8% 53.5%
4gniA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.66 27.0 3.11e-01 79.5% 48.8%
3d2fA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.60 25.0 2.90e-01 77.8% 48.8%
1y0hB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 25.0 2.72e-01 76.1% 43.9%
1xzpA02 1.20.120.430 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 0.57 47.0 4.14e-01 90.6% 60.8%
5jenA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.57 32.0 3.35e-01 83.8% 57.7%
5h5mA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.56 47.0 4.58e-01 96.6% 80.8%
2zw3A00 1.20.1440.80 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain 0.56 43.0 3.57e-01 80.3% 62.2%
3rkoG00 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 43.0 4.63e-01 99.1% 96.0%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.55 24.0 3.50e-01 72.6% 87.7%
2dt9A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 22.0 2.62e-01 76.1% 51.9%
3s1tA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 22.0 2.61e-01 76.1% 51.2%
6adqG01 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.55 50.0 4.32e-01 100.0% 65.2%
1m56C02 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.54 46.0 3.91e-01 98.3% 55.6%
7w9wA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.54 46.0 3.59e-01 94.0% 45.4%
6l3tA01 1.20.1440.80 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain 0.53 41.0 3.43e-01 80.3% 59.3%
1l1lA01 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.53 40.0 2.63e-01 79.5% 31.7%
2p92A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.53 34.0 3.73e-01 75.2% 80.0%
2cxcA02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.53 22.0 2.77e-01 73.5% 60.9%
3wt0A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 39.0 3.49e-01 76.9% 81.2%
4ip8A00 1.10.132.110 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein 0.52 37.0 3.97e-01 84.6% 81.9%
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 30.0 3.54e-01 90.6% 82.1%
4q5qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 33.0 3.48e-01 79.5% 73.3%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4483958 6155.2.1.1 ↗ alpha duplicates or obligate multimers › TOG superfamily › PnuC › PnuC › NMN_transporter 0.76 50.0 3.92e-01 88.9% 33.2%
4932209 3843.1.1.6 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › MrpF_PhaF 0.72 42.0 5.03e-01 77.8% 85.0%
4974234 604.12.1.141 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › 8xMP 0.70 47.0 5.50e-01 86.3% 94.1%
5043090 5058.1.1.16 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 0.70 39.0 4.66e-01 70.9% 80.0%
4928060 5058.1.1.16 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 0.64 43.0 4.48e-01 87.2% 73.4%
3377533 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.63 50.0 3.51e-01 85.5% 28.0%
3917315 3937.1.1.1 ↗ alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Connexin 0.62 52.0 4.19e-01 88.0% 86.5%
3561564 3937.1.1.1 ↗ alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Connexin 0.62 51.0 3.98e-01 87.2% 78.4%
3765856 3937.1.1.1 ↗ alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Connexin 0.62 51.0 4.20e-01 88.0% 73.8%
3904532 3937.1.1.1 ↗ alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Connexin 0.62 51.0 3.89e-01 87.2% 75.0%
3919679 3937.1.1.1 ↗ alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Connexin 0.62 51.0 3.94e-01 87.2% 67.6%
3676117 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 49.0 3.81e-01 86.3% 40.4%
5031071 5082.1.1.1 ↗ alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux 0.59 41.0 3.76e-01 76.1% 54.7%
5025203 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.59 46.0 4.67e-01 91.5% 85.2%
4145438 3747.1.1.3 ↗ a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bbr_C 0.58 33.0 3.58e-01 85.5% 65.0%
3636298 5001.1.1.6 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Bac_rhodopsin 0.58 48.0 3.80e-01 88.9% 89.6%
4645961 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.57 43.0 3.54e-01 76.1% 72.6%
3215753 3226.1.1.1 ↗ alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › Xan_ur_permease 0.57 44.0 2.86e-01 80.3% 72.1%
3215999 5001.1.1.111 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw 0.56 48.0 3.34e-01 94.0% 72.2%
3234667 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.56 47.0 3.45e-01 94.0% 70.4%
5040343 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.56 21.0 2.88e-01 76.1% 65.0%
3649913 5050.1.1.58 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › NFD4_C 0.55 40.0 3.55e-01 86.3% 51.8%
5077393 3281.1.1.1 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M 0.55 47.0 3.10e-01 92.3% 74.8%
3789630 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.55 45.0 3.58e-01 87.2% 76.5%
3568382 2484.1.1.145 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 0.55 40.0 2.82e-01 77.8% 69.6%
3615590 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.55 38.0 3.80e-01 70.9% 100.0%
3931251 2484.1.1.145 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 0.54 41.0 3.04e-01 78.6% 86.5%
3799917 633.23.1.17 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › DuoxA 0.54 44.0 3.45e-01 87.2% 69.0%
3242640 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.54 42.0 3.76e-01 85.5% 64.7%
3707374 109.4.1.1341 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG3_N, COG3_C 0.53 47.0 3.09e-01 100.0% 42.9%
3230548 633.23.1.5 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like 0.53 43.0 3.51e-01 86.3% 58.6%
3652035 601.16.1.8 ↗ alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › DUF1218 0.53 48.0 4.15e-01 97.4% 79.4%
4435043 2484.1.1.178 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA+FtsA 0.53 41.0 2.83e-01 81.2% 67.6%
3241070 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.52 48.0 3.75e-01 100.0% 85.3%
3466238 206.1.1.14 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 0.52 45.0 3.13e-01 100.0% 50.2%
3270655 5001.1.1.5 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.52 47.0 3.61e-01 100.0% 74.0%
3989430 3755.3.1.127 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › NFACT_N 0.52 37.0 3.49e-01 74.4% 94.3%
3924910 633.21.1.0 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.52 41.0 3.67e-01 85.5% 67.9%
3310916 5069.1.1.55 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › DUF1218 0.52 46.0 4.06e-01 97.4% 82.4%
4954601 304.8.1.12 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_8 0.51 21.0 2.53e-01 78.6% 54.7%
3575264 604.12.1.61 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Clc-like 0.51 41.0 4.22e-01 86.3% 87.8%
4575479 3281.1.1.1 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M 0.51 45.0 3.09e-01 100.0% 97.5%
4111183 2484.1.1.206 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70, FGGY_C 0.51 38.0 3.15e-01 77.8% 74.1%
3971675 601.3.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain 0.51 44.0 4.30e-01 94.9% 95.4%
4278105 633.23.1.17 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › DuoxA 0.51 46.0 3.78e-01 100.0% 70.2%
3384050 601.1.1.91 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF1218 0.51 45.0 3.97e-01 98.3% 78.3%
4886046 511.1.1.1 ↗ beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › HSP70 0.51 37.0 3.10e-01 76.9% 74.8%
3615671 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 44.0 3.53e-01 98.3% 93.1%
4024127 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.50 45.0 3.80e-01 98.3% 100.0%
4014403 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 37.0 3.05e-01 76.1% 72.4%
4933489 2007.13.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Rossmann-like domains in magnesium chelatase catalytic subunit › Rossmann-like domains in magnesium chelatase catalytic subunit › CobN-Mg_chel 0.50 31.0 2.58e-01 94.0% 33.5%