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MN549360.1__QGZ14024.1__RL38J1_140__00140

Bact-Vir

MN549360.1__QGZ14024.1__RL38J1_140__00140

Identity

Accession:
MN549360 ↗
Kingdom:
phage

Quality

72.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-80
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ru1A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.74 46.0 3.54e-01 88.9% 28.6%
4ljkG00 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.73 54.0 3.71e-01 90.5% 23.5%
4g2dA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.72 59.0 3.73e-01 90.5% 22.3%
2iz6A00 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.72 58.0 4.26e-01 95.2% 34.6%
2j16A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.72 59.0 4.66e-01 92.1% 52.6%
2r0bA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.70 57.0 4.38e-01 92.1% 54.3%
2v4uA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.69 51.0 3.38e-01 96.8% 19.1%
2p4dA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.68 58.0 4.35e-01 96.8% 48.5%
2g6zA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.68 55.0 4.28e-01 92.1% 53.1%
3l23A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.67 59.0 3.86e-01 100.0% 28.0%
1a9xA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.66 50.0 4.12e-01 88.9% 44.8%
6qelJ01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 52.0 3.83e-01 88.9% 31.5%
3wdmD00 3.40.50.12640 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphopantoate/pantothenate synthetase 0.65 49.0 3.33e-01 93.7% 20.8%
6fnuA00 3.20.20.220 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.65 52.0 3.38e-01 90.5% 19.3%
3eccA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 50.0 3.78e-01 88.9% 39.5%
2awnD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 44.0 3.51e-01 88.9% 33.8%
2xvyA01 3.40.50.1400 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 53.0 4.21e-01 100.0% 73.2%
1m8pA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 51.0 3.74e-01 95.2% 37.0%
1xovA01 3.40.630.40 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases 0.61 48.0 3.39e-01 84.1% 85.9%
3okpA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.61 46.0 3.39e-01 90.5% 28.6%
4q7eA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 43.0 3.51e-01 84.1% 39.2%
1s2oA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.60 45.0 3.39e-01 84.1% 32.4%
3oy2A02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.59 48.0 3.40e-01 96.8% 26.3%
4pqgA03 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.59 44.0 3.40e-01 90.5% 31.6%
6h0cA02 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.59 46.0 3.64e-01 90.5% 38.8%
1vhxB00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.59 49.0 3.88e-01 95.2% 62.3%
4rk6A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 48.0 3.94e-01 95.2% 61.1%
1nmnA00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.59 48.0 4.01e-01 95.2% 70.0%
4r81C00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.58 46.0 3.38e-01 93.7% 60.9%
3ksmA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 48.0 3.90e-01 95.2% 65.1%
1zu4A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 46.0 3.29e-01 93.7% 87.2%
5hsgA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 48.0 3.88e-01 95.2% 63.2%
4d02A02 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.56 46.0 3.64e-01 95.2% 57.3%
2rjoA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 44.0 3.47e-01 90.5% 55.7%
2f5xA01 3.40.190.150 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bordetella uptake gene, domain 1 0.56 43.0 3.19e-01 85.7% 77.7%
4ap5A01 3.40.50.11340 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 44.0 3.24e-01 92.1% 94.5%
1vgyA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.55 46.0 3.12e-01 95.2% 39.5%
2zogA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.55 47.0 3.11e-01 100.0% 35.9%
4rweA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 43.0 3.48e-01 90.5% 64.8%
6hlyA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 43.0 3.07e-01 88.9% 74.1%
3bblA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 41.0 3.33e-01 88.9% 60.1%
1t5bB00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.53 46.0 3.34e-01 100.0% 61.6%
4q5tA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 42.0 3.28e-01 88.9% 91.2%
4wutA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 41.0 3.30e-01 90.5% 60.1%
2qjoA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 42.0 3.02e-01 85.7% 61.2%
2b3fA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 40.0 2.95e-01 88.9% 91.6%
2rinA02 3.40.190.100 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Glycine betaine-binding periplasmic protein; domain 2 0.52 37.0 3.21e-01 79.4% 51.8%
4ab5B01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 41.0 3.38e-01 87.3% 88.7%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5074182 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.80 72.0 4.88e-01 100.0% 28.8%
3668330 7563.1.1.0 a/b three-layered sandwiches › MCP/YpsA-related › MCP/YpsA-related › MCP/YpsA-related 0.77 59.0 4.27e-01 95.2% 31.0%
4089113 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.76 57.0 3.85e-01 90.5% 22.2%
4627252 7589.1.1.2 a/b three-layered sandwiches › YgbK-like › YgbK-like › YgbK-like › NBD_C 0.76 64.0 4.66e-01 93.7% 40.6%
1411587 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.75 62.0 4.01e-01 96.8% 21.1%
5071253 300.1.1.6 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB 0.75 55.0 4.28e-01 88.9% 35.7%
3628611 2002.1.2.2 a/b barrels › TIM beta/alpha-barrel › TIM barrels › Hypothetical protein Cthe_0052 › Glyco_hydro_18 0.73 61.0 4.69e-01 95.2% 47.3%
3981320 2004.1.1.1127 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cas3_HD 0.73 64.0 3.70e-01 98.4% 19.8%
4972374 7589.1.1.2 a/b three-layered sandwiches › YgbK-like › YgbK-like › YgbK-like › NBD_C 0.72 64.0 4.58e-01 100.0% 45.7%
3299538 2006.1.6.12 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 0.72 58.0 4.09e-01 93.7% 28.0%
4250439 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.72 64.0 4.08e-01 100.0% 39.0%
4971856 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.71 58.0 3.83e-01 95.2% 21.5%
5052708 2004.1.1.162 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.69 53.0 3.65e-01 84.1% 34.1%
5065614 2007.2.3.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.69 59.0 4.88e-01 96.8% 53.0%
1866752 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.69 60.0 3.87e-01 100.0% 21.1%
4932293 2002.1.1.36 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pterin_bind 0.69 53.0 3.52e-01 88.9% 20.0%
3514292 2007.2.3.2 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.69 56.0 4.45e-01 92.1% 57.0%
4970533 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.69 55.0 3.49e-01 88.9% 22.8%
3939649 7579.1.1.70 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF1057 0.68 59.0 3.85e-01 98.4% 21.8%
3336027 207.1.1.77 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBD 0.68 52.0 4.26e-01 88.9% 43.2%
4946571 2008.1.1.85 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_TdeIII 0.68 56.0 3.99e-01 95.2% 33.7%
3217945 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.67 56.0 3.85e-01 96.8% 28.5%
3213642 7572.1.1.1 a/b three-layered sandwiches › Phosphofructokinase C-terminal domain › Phosphofructokinase C-terminal domain › Phosphofructokinase C-terminal domain › PFK 0.67 55.0 4.53e-01 95.2% 76.8%
4420367 2007.1.3.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › UPF0004 0.66 51.0 4.06e-01 90.5% 41.6%
987584 2004.1.1.208 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_33 0.66 51.0 3.74e-01 84.1% 82.5%
4957767 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.66 58.0 3.79e-01 100.0% 23.5%
3931462 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.66 53.0 3.55e-01 88.9% 23.7%
4935010 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.66 57.0 3.83e-01 100.0% 25.8%
3969430 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.65 47.0 3.48e-01 84.1% 27.8%
3919864 7529.1.1.0 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like 0.64 53.0 4.28e-01 100.0% 45.4%
5057756 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.64 48.0 3.51e-01 90.5% 28.9%
4275981 2495.1.1.1 a/b three-layered sandwiches › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain › MinC_N 0.63 50.0 4.77e-01 90.5% 84.0%
5068489 2002.1.1.102 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP 0.63 50.0 3.48e-01 90.5% 28.4%
4976449 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.63 52.0 3.44e-01 100.0% 20.3%
3599422 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.62 51.0 3.67e-01 95.2% 29.8%
4130983 2003.6.1.3 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › HK 0.62 50.0 3.35e-01 88.9% 21.5%
4124299 621.1.1.3 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB 0.62 51.0 4.55e-01 90.5% 100.0%
4295946 328.9.1.1 a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain › SepF 0.62 54.0 4.86e-01 100.0% 80.0%
5048648 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.62 48.0 3.54e-01 90.5% 30.6%
5065527 2002.1.1.36 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pterin_bind 0.62 52.0 3.41e-01 96.8% 23.7%
5073063 2004.1.1.163 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › KTI12 0.62 50.0 3.64e-01 90.5% 38.9%
5029130 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.61 47.0 3.56e-01 90.5% 31.7%
5012825 4143.1.1.0 a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like 0.61 41.0 3.60e-01 79.4% 45.3%
4945404 2004.1.1.208 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_33 0.61 49.0 3.56e-01 90.5% 41.8%
4184145 2488.1.1.5 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SPOUT_MTase 0.60 48.0 3.69e-01 92.1% 52.9%
5026292 7523.1.1.28 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_8 0.59 47.0 3.37e-01 87.3% 87.4%
5064957 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 45.0 3.56e-01 90.5% 35.3%
4101096 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.59 46.0 3.26e-01 90.5% 24.8%
3439148 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.59 46.0 3.41e-01 88.9% 34.3%
3481149 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.58 45.0 3.62e-01 92.1% 78.0%
5008479 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.58 46.0 3.18e-01 90.5% 23.3%
3489315 7512.1.1.37 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › FUT8_N_cat 0.58 46.0 3.64e-01 92.1% 78.0%
3973021 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 49.0 3.61e-01 96.8% 39.3%
4962510 2011.1.1.6 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 0.56 44.0 2.98e-01 90.5% 55.4%
4958240 2011.1.1.6 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 0.56 49.0 3.17e-01 100.0% 38.0%
4573155 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.55 45.0 3.07e-01 95.2% 23.1%
3830503 2006.1.4.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.55 45.0 3.65e-01 88.9% 83.3%
5011700 2007.1.14.6 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › CbiX 0.55 39.0 3.07e-01 77.8% 33.1%
3254129 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 43.0 3.33e-01 95.2% 51.3%