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MN549360.1__QGZ14037.1__RL38J1_259__00259

Bact-Vir

MN549360.1__QGZ14037.1__RL38J1_259__00259

Identity

Accession:
MN549360 ↗
Kingdom:
phage

Quality

88.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-63
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5d1oA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.74 60.0 5.65e-01 100.0% 74.0%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.74 53.0 5.68e-01 86.4% 92.0%
2vugA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.71 55.0 5.27e-01 100.0% 72.2%
3u02A01 3.30.70.2200 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 59.0 4.53e-01 100.0% 86.1%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.68 52.0 4.52e-01 86.4% 57.1%
2vfkA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.67 58.0 4.04e-01 100.0% 95.6%
2nycA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.65 43.0 3.38e-01 81.4% 31.5%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.64 47.0 4.64e-01 89.8% 74.2%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.64 48.0 4.10e-01 86.4% 56.9%
3weeA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 49.0 3.54e-01 86.4% 65.0%
3q8pB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.64 48.0 4.09e-01 86.4% 62.0%
4ecnA01 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.62 56.0 4.62e-01 100.0% 61.2%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.61 50.0 3.81e-01 100.0% 93.4%
1sq2N00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 52.0 4.32e-01 100.0% 67.9%
3p9xA00 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.61 50.0 3.56e-01 94.9% 51.8%
1wi0A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 51.0 4.26e-01 100.0% 80.5%
2z5bB01 3.30.230.90 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.60 41.0 3.32e-01 71.2% 46.2%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.60 49.0 4.44e-01 100.0% 95.7%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.60 41.0 3.94e-01 72.9% 73.2%
2vtfA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 47.0 3.41e-01 88.1% 46.9%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.60 47.0 4.40e-01 89.8% 70.1%
4kvxA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 50.0 3.83e-01 98.3% 63.8%
4m0wA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.59 48.0 3.72e-01 91.5% 94.9%
3d8pB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 50.0 3.75e-01 100.0% 58.7%
4me3A03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.58 43.0 4.42e-01 89.8% 87.3%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.58 47.0 4.39e-01 100.0% 72.4%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.58 43.0 4.57e-01 84.7% 96.0%
3ihlB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 48.0 3.29e-01 98.3% 77.7%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.57 46.0 4.15e-01 100.0% 93.6%
2q0oA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.56 41.0 3.00e-01 78.0% 76.2%
1ltlA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.56 41.0 4.42e-01 84.7% 95.9%
3fk8A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 38.0 3.05e-01 72.9% 71.0%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.55 47.0 3.63e-01 96.6% 97.8%
6l4lA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.55 44.0 3.69e-01 94.9% 48.3%
4ccjA01 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.54 45.0 3.09e-01 100.0% 28.9%
1wmhA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 45.0 4.16e-01 100.0% 97.6%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 37.0 3.31e-01 71.2% 51.8%
1wkyA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 44.0 3.50e-01 100.0% 46.5%
2kgfA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.53 42.0 3.34e-01 93.2% 92.1%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 43.0 3.86e-01 100.0% 75.0%
6xzqA01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.53 44.0 3.30e-01 98.3% 62.3%
3gbyA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.53 43.0 3.50e-01 96.6% 55.1%
2hpuA02 3.30.70.2050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 42.0 4.17e-01 91.5% 92.1%
7ct1A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 41.0 3.79e-01 100.0% 98.8%
4cvuA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 42.0 3.00e-01 98.3% 51.3%
1yuzA02 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.50 30.0 3.51e-01 78.0% 92.1%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.50 39.0 3.02e-01 94.9% 57.9%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3686690 304.3.1.1 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.74 67.0 5.88e-01 100.0% 97.6%
3200703 304.3.1.1 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.73 66.0 5.79e-01 100.0% 96.5%
3216210 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.73 53.0 5.65e-01 84.7% 94.0%
4231372 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.72 56.0 5.34e-01 84.7% 98.6%
3958896 4187.2.1.0 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.72 51.0 5.12e-01 81.4% 75.0%
3672250 207.1.1.116 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_FBXL15 0.72 51.0 3.54e-01 86.4% 23.2%
4147528 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.71 54.0 5.17e-01 83.1% 98.6%
3573883 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.71 55.0 4.38e-01 86.4% 48.0%
3289401 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.70 61.0 4.79e-01 100.0% 50.0%
4281749 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.70 54.0 4.37e-01 86.4% 45.8%
3285401 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.70 60.0 5.62e-01 100.0% 77.3%
4418109 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.70 54.0 4.11e-01 86.4% 39.2%
4448678 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.69 55.0 5.14e-01 88.1% 98.7%
5065436 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.67 52.0 5.13e-01 86.4% 79.7%
3706132 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.67 58.0 5.22e-01 100.0% 97.6%
3968768 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.67 51.0 4.76e-01 84.7% 96.0%
4004704 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.66 45.0 4.91e-01 86.4% 93.3%
3423236 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 54.0 5.09e-01 98.3% 74.7%
3333678 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 46.0 5.00e-01 100.0% 97.8%
3279952 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 58.0 4.97e-01 100.0% 66.3%
4974741 304.125.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in Api92-like proteins › ferredoxin-like domain in Api92-like proteins 0.65 57.0 5.10e-01 100.0% 95.3%
4995671 3115.1.1.12 a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 0.65 45.0 4.79e-01 86.4% 88.0%
3969006 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.65 45.0 4.88e-01 86.4% 95.6%
4007508 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.65 44.0 4.69e-01 86.4% 84.0%
5075866 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.65 53.0 4.91e-01 96.6% 100.0%
4969863 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.64 48.0 4.54e-01 84.7% 68.0%
4937773 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.63 48.0 4.83e-01 84.7% 94.8%
5067865 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.63 48.0 4.62e-01 86.4% 72.9%
4967222 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.63 48.0 4.86e-01 86.4% 85.0%
4939739 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.62 48.0 4.84e-01 86.4% 94.9%
4013514 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.62 47.0 4.03e-01 86.4% 51.4%
4927303 525.1.1.1 a+b two layers › Urease, gamma-subunit › Urease, gamma-subunit › Urease, gamma-subunit › Urease_gamma 0.62 55.0 4.38e-01 100.0% 93.3%
138941 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.61 42.0 4.13e-01 84.7% 66.2%
4955690 327.10.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related 0.60 44.0 4.19e-01 78.0% 70.0%
4951473 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.60 45.0 4.52e-01 86.4% 85.7%
1392732 221.1.1.4 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.60 51.0 4.22e-01 100.0% 79.1%
3215588 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 49.0 4.35e-01 100.0% 84.2%
5050481 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 40.0 3.07e-01 71.2% 33.1%
4945301 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 50.0 3.73e-01 100.0% 53.3%
5048832 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.57 39.0 3.21e-01 74.6% 45.8%
5009694 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 48.0 3.95e-01 100.0% 67.0%
3704397 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 47.0 4.31e-01 100.0% 92.9%
5078886 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.56 38.0 3.14e-01 71.2% 98.2%
3443843 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.56 48.0 2.78e-01 100.0% 21.0%
3615104 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.55 38.0 3.26e-01 71.2% 45.3%
3239822 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 45.0 3.68e-01 100.0% 69.2%
4944314 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 37.0 3.01e-01 71.2% 37.6%
4398495 109.21.1.8 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 0.55 49.0 2.74e-01 100.0% 22.7%
4948416 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.54 44.0 3.39e-01 91.5% 43.0%
3766042 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.54 45.0 3.82e-01 100.0% 74.5%
4952738 322.1.1.2 a+b two layers › HPr-like › HPr-like › HPr-like › 3H 0.52 45.0 3.74e-01 100.0% 72.5%
3300895 375.13.1.3 few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › ubiquitin 0.52 41.0 4.27e-01 96.6% 92.7%
3816922 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.51 38.0 2.58e-01 86.4% 30.7%