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MN584918.1__QFR59792.1__VOWphi5012_008__00008

Bact-Vir

MN584918.1__QFR59792.1__VOWphi5012_008__00008

Identity

Accession:
MN584918 ↗
Kingdom:
phage

Quality

89.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Penintadodekavirus› Vibrio_phage_phi50-12

TaxID: 2654972

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-77
PDB
Domain cluster: rep: MG592549.1__AUR93115.1__NVP1183O_17__00017__D2-84
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1c8uA02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.67 46.0 3.98e-01 71.1% 77.4%
2hboA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.63 45.0 3.81e-01 76.3% 75.2%
1jzdC00 2.60.40.1250 Mainly Beta › Sandwich › Immunoglobulin-like › Thiol:disulfide interchange protein DsbD, N-terminal domain 0.61 42.0 3.63e-01 71.1% 95.8%
3gd6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.61 46.0 3.80e-01 82.9% 83.8%
3bf2A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.60 53.0 4.53e-01 100.0% 93.6%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 42.0 4.44e-01 100.0% 84.8%
1h6hA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.60 47.0 3.87e-01 86.8% 82.5%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 39.0 4.19e-01 100.0% 82.5%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.59 51.0 4.04e-01 100.0% 64.1%
1gyvA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.58 53.0 4.51e-01 100.0% 83.3%
3butA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 45.0 3.82e-01 82.9% 88.8%
7jrmA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 41.0 4.15e-01 73.7% 75.7%
1jz7A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 44.0 3.88e-01 84.2% 89.6%
4gn2A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 46.0 3.33e-01 100.0% 29.6%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 39.0 4.15e-01 100.0% 88.9%
1lj5A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.56 47.0 3.74e-01 93.4% 74.7%
1tyeA00 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.56 47.0 2.99e-01 98.7% 20.1%
4kh9B02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.55 39.0 3.48e-01 75.0% 76.1%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.55 45.0 3.90e-01 100.0% 56.8%
3nqzA01 3.10.450.490 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 47.0 4.41e-01 93.4% 92.3%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 43.0 4.43e-01 100.0% 91.9%
4dy0B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 45.0 3.85e-01 94.7% 89.8%
3mnmA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.54 47.0 4.19e-01 100.0% 88.4%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 39.0 3.99e-01 100.0% 84.7%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.53 44.0 3.69e-01 93.4% 84.4%
6secA03 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 47.0 3.19e-01 100.0% 73.6%
1vqqA01 3.10.450.100 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 0.53 45.0 4.07e-01 98.7% 88.1%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 45.0 3.10e-01 94.7% 42.3%
6hpvA01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 4.11e-01 96.1% 81.0%
6f1uK02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.52 45.0 3.72e-01 100.0% 75.9%
4o3vA00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.52 43.0 3.61e-01 93.4% 79.0%
2cc3A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.52 44.0 3.58e-01 93.4% 79.2%
4qhzA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.52 45.0 3.25e-01 100.0% 59.6%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.52 32.0 3.37e-01 97.4% 69.2%
5w17A01 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.52 43.0 3.52e-01 94.7% 74.0%
3ub1D02 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 3.78e-01 93.4% 71.1%
4kc3B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.44e-01 75.0% 71.6%
1vwxB03 3.30.1430.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › 0.51 41.0 3.52e-01 88.2% 100.0%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.51 35.0 2.77e-01 72.4% 35.8%
4q0yA00 2.60.40.4400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 36.0 3.12e-01 77.6% 97.7%
2i1yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.50 43.0 2.90e-01 94.7% 40.8%
7pkwA01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 41.0 3.77e-01 93.4% 68.9%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4568161 283.2.1.18 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Lipoprotein_17 0.68 42.0 4.19e-01 72.4% 60.0%
3483729 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.66 49.0 4.23e-01 78.9% 95.0%
3472467 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.65 49.0 4.96e-01 84.2% 82.7%
4987319 1036.1.1.2 ↗ a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › PF29994 0.65 45.0 4.01e-01 73.7% 58.2%
5038095 504.1.1.0 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.64 53.0 4.53e-01 92.1% 88.8%
3672943 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.64 48.0 5.15e-01 81.6% 98.5%
3852952 330.1.1.5 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.62 54.0 5.38e-01 100.0% 97.5%
4077367 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.62 42.0 4.48e-01 100.0% 84.6%
4932637 330.2.1.0 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.61 49.0 4.64e-01 100.0% 73.3%
4026006 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 47.0 4.68e-01 100.0% 80.0%
3220419 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.61 44.0 3.99e-01 78.9% 83.6%
5014254 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 37.0 4.05e-01 71.1% 76.7%
3824181 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.61 42.0 4.53e-01 71.1% 90.0%
5079018 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 40.0 3.96e-01 71.1% 69.4%
3963954 7503.1.1.4 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE 0.59 52.0 4.23e-01 98.7% 83.4%
861 9.3.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C 0.59 51.0 4.39e-01 100.0% 85.2%
3659467 243.1.1.45 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › S6PP_C 0.58 40.0 3.45e-01 72.4% 82.4%
3594717 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.57 39.0 3.36e-01 73.7% 45.0%
3584555 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 43.0 4.43e-01 100.0% 87.1%
4936010 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.57 43.0 2.91e-01 84.2% 34.5%
4952885 3414.1.1.13 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 0.57 39.0 3.64e-01 73.7% 56.8%
5008812 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.57 49.0 4.41e-01 96.1% 83.8%
3827309 244.3.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.57 43.0 4.14e-01 84.2% 81.1%
3605420 2484.1.1.26 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi 0.56 43.0 3.07e-01 84.2% 26.4%
4984061 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.56 43.0 2.93e-01 84.2% 42.0%
4364215 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.56 44.0 3.83e-01 86.8% 96.7%
3505947 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.56 47.0 4.00e-01 90.8% 75.0%
3465939 5.1.3.68 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.56 48.0 3.14e-01 98.7% 23.6%
3410370 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 41.0 4.23e-01 100.0% 88.6%
3601539 2484.1.1.26 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi 0.55 41.0 3.08e-01 84.2% 40.4%
4029815 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 41.0 3.48e-01 81.6% 65.4%
4508852 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.54 46.0 4.13e-01 100.0% 80.9%
5023510 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.54 41.0 2.78e-01 85.5% 32.2%
4563194 274.1.1.40 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › 17kDa_Anti_2 0.54 43.0 4.03e-01 88.2% 97.9%
3217507 243.1.1.98 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5382_C 0.54 37.0 3.32e-01 73.7% 85.1%
3867704 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.53 46.0 3.03e-01 94.7% 38.4%
4330094 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.53 43.0 4.11e-01 100.0% 76.7%
1278471 243.1.1.7 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MecA_N 0.53 45.0 4.05e-01 98.7% 84.2%
4339224 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.53 45.0 3.54e-01 100.0% 57.8%
4977257 2003.1.5.82 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.53 39.0 2.78e-01 80.3% 96.4%
4956007 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.53 46.0 4.14e-01 98.7% 80.0%
4984962 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.52 44.0 3.05e-01 98.7% 82.6%
3689096 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 45.0 3.53e-01 100.0% 84.6%
3846130 4.1.1.311 ↗ beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.52 46.0 3.41e-01 100.0% 66.3%
3716903 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 45.0 2.95e-01 98.7% 29.7%
3423922 243.3.1.19 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.52 43.0 3.85e-01 96.1% 64.0%
4966532 3414.1.1.13 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 0.51 35.0 3.28e-01 75.0% 55.0%
4022153 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.51 45.0 3.68e-01 100.0% 85.5%
4664932 243.1.1.34 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › YchJ_M-like 0.51 43.0 3.70e-01 96.1% 71.2%
4168380 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.51 43.0 3.66e-01 96.1% 83.8%
4373837 243.1.1.6 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 0.50 42.0 3.52e-01 96.1% 83.6%
3972133 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.50 36.0 2.65e-01 77.6% 97.9%