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MN584918.1__QFR59825.1__VOWphi5012_041__00041

Bact-Vir

MN584918.1__QFR59825.1__VOWphi5012_041__00041

Identity

Accession:
MN584918 ↗
Kingdom:
phage

Quality

88.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Penintadodekavirus› Vibrio_phage_phi50-12

TaxID: 2654972

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-71
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 64.0 5.14e-01 100.0% 47.0%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.76 68.0 5.32e-01 100.0% 93.9%
2fhdA02 2.30.30.810 Mainly Beta › Roll › SH3 type barrels. › 0.70 59.0 5.62e-01 100.0% 79.2%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 56.0 4.71e-01 100.0% 52.8%
5dm6H00 2.40.150.20 Mainly Beta › Beta Barrel › Ribosomal Protein L14 › Ribosomal protein L14/L23 0.66 60.0 4.62e-01 100.0% 67.9%
8aa9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 54.0 4.41e-01 90.5% 78.9%
1whmA01 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.65 59.0 5.66e-01 100.0% 98.6%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.64 56.0 4.76e-01 98.4% 100.0%
1vx7M00 2.40.150.20 Mainly Beta › Beta Barrel › Ribosomal Protein L14 › Ribosomal protein L14/L23 0.62 56.0 4.36e-01 100.0% 60.6%
2bi0A01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.61 50.0 3.87e-01 93.7% 89.5%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.61 48.0 4.05e-01 100.0% 50.0%
3nv0B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 49.0 3.96e-01 95.2% 79.4%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.60 47.0 3.41e-01 100.0% 29.3%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.60 48.0 4.58e-01 88.9% 94.6%
2k5vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 47.0 4.13e-01 90.5% 81.6%
1h6hA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 44.0 3.38e-01 82.5% 80.4%
1ocsA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 42.0 3.38e-01 81.0% 54.5%
3ptaA04 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.57 46.0 3.48e-01 100.0% 44.1%
1vqqA01 3.10.450.100 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 0.56 46.0 3.97e-01 96.8% 89.9%
2xglA00 3.10.450.300 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › YebF/Colicin-M immunity protein 0.56 47.0 4.17e-01 95.2% 83.5%
2be3B01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.56 44.0 3.54e-01 90.5% 85.2%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 48.0 4.63e-01 100.0% 86.5%
4hj1A01 2.60.98.50 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › 0.53 46.0 3.45e-01 100.0% 70.5%
1s0wC01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.53 44.0 3.98e-01 95.2% 87.9%
3moiA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 37.0 2.68e-01 85.7% 23.3%
7tm7B01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.53 41.0 2.55e-01 92.1% 25.6%
4gzvA00 2.40.128.490 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 0.53 38.0 3.10e-01 93.7% 36.7%
1eyqA02 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.52 44.0 3.35e-01 96.8% 78.6%
5dvyA01 3.10.450.100 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 0.52 43.0 3.55e-01 96.8% 78.6%
1xweA01 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 45.0 3.49e-01 98.4% 68.5%
8ew8A01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.52 43.0 3.05e-01 100.0% 81.9%
3hn3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.49e-01 88.9% 92.3%
1p5uB00 2.60.40.1090 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain 0.51 36.0 2.92e-01 81.0% 82.6%
4mp8A01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.50 39.0 3.01e-01 88.9% 71.4%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3557649 4.8.1.20 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PWP3A-B_N 0.82 66.0 5.48e-01 100.0% 51.4%
3482706 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 68.0 4.98e-01 100.0% 50.0%
1144815 4.1.1.103 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12 0.75 69.0 6.31e-01 100.0% 80.0%
4549698 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.73 62.0 5.36e-01 100.0% 61.1%
5022323 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 58.0 5.76e-01 93.7% 95.4%
3505947 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.69 62.0 4.98e-01 100.0% 77.5%
145843 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.68 56.0 4.71e-01 100.0% 52.8%
4398865 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 59.0 5.13e-01 100.0% 84.2%
4017099 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.63 57.0 3.85e-01 100.0% 32.9%
3597361 4.23.1.0 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like 0.63 55.0 4.40e-01 100.0% 58.5%
3700518 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.63 55.0 4.40e-01 100.0% 58.5%
3230100 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 45.0 4.68e-01 90.5% 87.3%
3925915 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.62 44.0 4.73e-01 90.5% 96.0%
3996695 3256.1.1.0 ↗ a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain 0.62 43.0 4.55e-01 90.5% 87.3%
3253253 243.1.1.2 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.60 50.0 3.97e-01 95.2% 80.7%
3558388 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.60 45.0 4.52e-01 82.5% 83.1%
3275390 2.1.1.105 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NMD3_OB 0.59 47.0 3.87e-01 88.9% 74.2%
3472467 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.59 46.0 4.34e-01 84.1% 88.0%
5054128 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 50.0 4.14e-01 95.2% 85.2%
3738332 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.59 49.0 3.75e-01 100.0% 44.0%
3712462 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.59 51.0 3.04e-01 100.0% 42.9%
3855663 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.59 44.0 3.53e-01 82.5% 91.5%
3965166 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 47.0 4.22e-01 90.5% 100.0%
3623547 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.58 44.0 4.30e-01 84.1% 84.3%
3255739 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.58 44.0 4.31e-01 84.1% 85.7%
3251381 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.58 44.0 4.40e-01 84.1% 92.3%
3914410 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.58 44.0 4.24e-01 84.1% 81.1%
None — 0.58 50.0 3.02e-01 100.0% 46.9%
3736480 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.57 49.0 3.71e-01 96.8% 95.5%
3430262 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.57 44.0 3.29e-01 87.3% 73.1%
3509864 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.57 44.0 3.54e-01 84.1% 74.4%
3680403 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.57 44.0 3.34e-01 87.3% 72.7%
3460643 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.56 44.0 3.29e-01 85.7% 69.7%
4844428 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.56 42.0 4.08e-01 84.1% 80.0%
3691389 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.56 43.0 2.99e-01 85.7% 27.2%
3382308 2004.1.1.21 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RecA 0.56 45.0 2.97e-01 93.7% 83.3%
3497397 395.1.1.0 ↗ few secondary structure elements › Midkine-related › Midkine-related › Midkine-related 0.55 35.0 3.34e-01 71.4% 53.3%
3786271 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.55 42.0 3.17e-01 82.5% 61.3%
3222710 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.55 41.0 3.91e-01 84.1% 78.2%
3907178 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 45.0 3.99e-01 100.0% 77.1%
3814719 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.55 42.0 3.44e-01 87.3% 71.5%
3446187 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.54 42.0 3.24e-01 85.7% 66.0%
4024738 220.1.1.243 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF30062 0.54 46.0 3.99e-01 100.0% 70.5%
3487748 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 39.0 3.70e-01 77.8% 97.3%
3257790 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.54 43.0 3.51e-01 90.5% 72.0%
3957994 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 40.0 2.92e-01 87.3% 34.4%
3396462 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 40.0 3.98e-01 81.0% 78.5%
3404065 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.53 40.0 3.79e-01 84.1% 77.5%
3212498 243.3.1.70 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PF30099 0.52 43.0 3.89e-01 93.7% 65.6%
3659467 243.1.1.45 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › S6PP_C 0.52 42.0 3.47e-01 93.7% 84.0%
3963954 7503.1.1.4 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE 0.52 43.0 3.43e-01 98.4% 75.2%
3966462 223.3.1.3 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.51 38.0 2.53e-01 88.9% 80.0%
3550635 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.50 37.0 3.67e-01 84.1% 87.1%