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MN585966.1__QGJ87583.1__SEA_FAITH5X5_29__00029
Bact-VirMN585966.1__QGJ87583.1__SEA_FAITH5X5_29__00029
Identity
- Accession:
- MN585966 ↗
- Kingdom:
- phage
Quality
73.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 12-110
Domain cluster:
rep: S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00803__D8-94
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01541.31 best | GIY-YIG | 38.6 | 1.50e-09 | 75.8% | 93.6% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yd0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.86 | 61.0 | 6.47e-01 | 73.7% | 85.4% |
| 5nfiB01 | 2.60.40.2100 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.65 | 40.0 | 3.58e-01 | 70.7% | 45.3% |
| 3gf8A01 | 2.60.40.2100 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.64 | 40.0 | 3.36e-01 | 70.7% | 39.2% |
| 4jrfA01 | 2.60.40.2580 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 40.0 | 3.30e-01 | 70.7% | 40.0% |
| 2rs7A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 26.0 | 2.97e-01 | 78.8% | 58.1% |
| 1mgtA01 | 3.30.160.70 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain | 0.55 | 38.0 | 4.05e-01 | 73.7% | 86.4% |
| 6lpnA03 | 3.30.70.2190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 35.0 | 3.41e-01 | 72.7% | 82.5% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4468826 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.90 | 65.0 | 6.69e-01 | 74.7% | 83.2% |
| 4945828 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.90 | 66.0 | 6.92e-01 | 75.8% | 91.1% |
| 3986774 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.89 | 66.0 | 6.58e-01 | 75.8% | 78.0% |
| 4515517 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.89 | 66.0 | 6.89e-01 | 75.8% | 90.0% |
| 3588392 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.89 | 64.0 | 6.41e-01 | 73.7% | 80.0% |
| 4236834 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.89 | 65.0 | 7.05e-01 | 75.8% | 92.9% |
| 4947741 | 821.1.1.17 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF27096 | 0.88 | 65.0 | 7.00e-01 | 75.8% | 90.6% |
| 4054044 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.88 | 66.0 | 6.66e-01 | 77.8% | 89.0% |
| 4111785 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.88 | 64.0 | 6.56e-01 | 74.7% | 83.2% |
| 4170310 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.88 | 63.0 | 6.62e-01 | 73.7% | 88.9% |
| 4977317 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.88 | 63.0 | 5.85e-01 | 73.7% | 66.4% |
| 5052958 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.87 | 59.0 | 6.60e-01 | 73.7% | 86.3% |
| 4974405 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.87 | 66.0 | 6.90e-01 | 77.8% | 90.0% |
| 4994096 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.85 | 59.0 | 5.85e-01 | 75.8% | 68.3% |
| 5070409 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.81 | 58.0 | 6.20e-01 | 74.7% | 92.0% |
| 5039344 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.79 | 56.0 | 5.99e-01 | 75.8% | 84.7% |
| 5030770 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.75 | 59.0 | 6.09e-01 | 97.0% | 86.3% |
| 4186535 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.73 | 52.0 | 5.10e-01 | 72.7% | 100.0% |
| 4654177 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.54 | 48.0 | 3.64e-01 | 99.0% | 83.7% |
| 4180988 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.54 | 47.0 | 3.55e-01 | 98.0% | 84.0% |
| 4147528 | 4.1.1.307 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26132 | 0.53 | 34.0 | 4.10e-01 | 71.7% | 94.3% |
| 4057352 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.53 | 47.0 | 3.51e-01 | 100.0% | 83.9% |