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MN585966.1__QGJ87608.1__SEA_FAITH5X5_54__00054
Bact-VirMN585966.1__QGJ87608.1__SEA_FAITH5X5_54__00054
Identity
- Accession:
- MN585966 ↗
- Kingdom:
- phage
Quality
82.4
mean pLDDT
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-65
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xdnA02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.58 | 37.0 | 2.74e-01 | 98.3% | 24.5% |
| 2d9vA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 45.0 | 3.72e-01 | 89.7% | 51.9% |
| 2p1aB01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.56 | 50.0 | 3.71e-01 | 100.0% | 78.8% |
| 3vxvA00 | 3.30.890.10 | Alpha Beta › 2-Layer Sandwich › Methyl-cpg-binding Protein 2; Chain A › Methyl-cpg-binding Protein 2; Chain A | 0.56 | 39.0 | 3.82e-01 | 75.9% | 70.8% |
| 6rjiA03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 39.0 | 4.08e-01 | 87.9% | 84.6% |
| 3oyyB03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 39.0 | 3.97e-01 | 81.0% | 82.8% |
| 4bpnW02 | 2.40.50.740 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain | 0.53 | 38.0 | 3.99e-01 | 82.8% | 86.3% |
| 4uoyA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 41.0 | 2.88e-01 | 87.9% | 42.0% |
| 2oarB00 | 1.10.1200.120 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 | 0.52 | 35.0 | 2.87e-01 | 70.7% | 60.0% |
| 4bl7A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 41.0 | 3.49e-01 | 91.4% | 51.5% |
| 5ziyA01 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.51 | 41.0 | 3.00e-01 | 96.6% | 77.8% |
| 3hmuB01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 42.0 | 3.04e-01 | 100.0% | 43.9% |
| 2b7jB01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.50 | 35.0 | 2.71e-01 | 79.3% | 85.0% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4939430 | 242.2.1.1 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › DUF61 | 0.59 | 40.0 | 3.80e-01 | 75.9% | 58.6% |
| 4679178 | 7577.1.1.2 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_3 | 0.57 | 35.0 | 2.17e-01 | 87.9% | 9.7% |
| 3670347 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.57 | 41.0 | 3.76e-01 | 77.6% | 57.0% |
| 3243250 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.57 | 42.0 | 3.74e-01 | 81.0% | 78.8% |
| 3330329 | 2008.1.1.31 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › VRR_NUC | 0.57 | 38.0 | 2.60e-01 | 81.0% | 17.8% |
| 4029 | 620.1.1.0 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases | 0.57 | 50.0 | 3.79e-01 | 100.0% | 81.0% |
| 1030967 | 2485.1.1.23 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › DUF1223 | 0.57 | 48.0 | 4.00e-01 | 100.0% | 99.1% |
| 3863164 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.56 | 48.0 | 4.66e-01 | 96.6% | 96.9% |
| 4948049 | 242.2.1.0 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like | 0.56 | 37.0 | 3.67e-01 | 75.9% | 63.1% |
| 3257948 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.55 | 45.0 | 4.36e-01 | 94.8% | 88.2% |
| 2403546 | 3758.1.1.0 ↗ | alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins | 0.55 | 44.0 | 3.18e-01 | 98.3% | 36.7% |
| None | — | 0.54 | 40.0 | 3.61e-01 | 81.0% | 91.8% | |
| 3573504 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.54 | 43.0 | 4.02e-01 | 91.4% | 84.0% |
| 5039184 | 321.1.1.6 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Pup_ligase | 0.53 | 42.0 | 2.63e-01 | 91.4% | 40.3% |
| 3879359 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.53 | 44.0 | 2.62e-01 | 100.0% | 96.1% |
| 3861538 | 220.1.1.118 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › RHG20_PH | 0.53 | 41.0 | 3.27e-01 | 89.7% | 40.8% |
| 4978827 | 7577.1.1.2 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_3 | 0.52 | 41.0 | 2.70e-01 | 96.6% | 34.4% |
| 4431537 | 7577.1.1.2 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_3 | 0.52 | 37.0 | 2.40e-01 | 79.3% | 83.8% |
| 3498240 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.52 | 44.0 | 2.92e-01 | 100.0% | 22.7% |
| 4213616 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.52 | 41.0 | 3.61e-01 | 93.1% | 72.6% |
| 3432480 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.52 | 43.0 | 3.99e-01 | 96.6% | 85.3% |
| 3740387 | 376.1.1.17 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-rbx1 | 0.51 | 41.0 | 3.67e-01 | 94.8% | 88.9% |
| 5014724 | 295.1.1.51 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FtsQ_DivIB_C | 0.50 | 42.0 | 3.60e-01 | 98.3% | 61.0% |
| 3704076 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.50 | 42.0 | 3.71e-01 | 100.0% | 61.1% |
D2
high
residues 84-142
Domain cluster:
rep: NC_070948.1__YP_010667024.1__PQB84_gp073__00051__D65-123