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MN585979.1__QGJ88842.1__SEA_YECEY3_91__00089
Bact-VirMN585979.1__QGJ88842.1__SEA_YECEY3_91__00089
Identity
- Accession:
- MN585979 ↗
- Kingdom:
- phage
Quality
72.5
mean pLDDT
Taxonomy
TaxID: 2656617
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 37-80
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2q6iA02 | 2.40.30.90 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like | 0.65 | 53.0 | 4.19e-01 | 97.7% | 47.6% |
| 3mqgA02 | 2.20.70.110 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.64 | 42.0 | 4.35e-01 | 72.7% | 74.4% |
| 4msxA02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.64 | 43.0 | 2.62e-01 | 70.5% | 84.8% |
| 8bs9A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.64 | 46.0 | 2.77e-01 | 77.3% | 89.0% |
| 5b6iA02 | 2.40.30.90 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like | 0.64 | 52.0 | 4.09e-01 | 100.0% | 52.3% |
| 2mdiA00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.63 | 42.0 | 3.92e-01 | 70.5% | 76.8% |
| 2jroA01 | 3.30.1910.10 | Alpha Beta › 2-Layer Sandwich › so0334 like fold › so0334 like domain | 0.60 | 43.0 | 3.83e-01 | 77.3% | 64.6% |
| 4cswA02 | 3.40.366.30 | Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 | 0.60 | 40.0 | 2.76e-01 | 70.5% | 38.1% |
| 3riqA00 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.59 | 50.0 | 2.85e-01 | 100.0% | 10.7% |
| 5xd6B01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.59 | 39.0 | 3.18e-01 | 70.5% | 87.2% |
| 2gjwC01 | 3.40.1350.150 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.58 | 44.0 | 3.21e-01 | 88.6% | 48.6% |
| 1h0hA02 | 3.40.50.740 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 39.0 | 2.41e-01 | 72.7% | 54.4% |
| 2dcnA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.56 | 43.0 | 2.73e-01 | 95.5% | 65.9% |
| 3mt1A01 | 2.40.37.10 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 | 0.56 | 42.0 | 2.96e-01 | 81.8% | 92.0% |
| 3wwxA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.55 | 45.0 | 2.69e-01 | 93.2% | 17.9% |
| 1yqsA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.55 | 45.0 | 2.69e-01 | 93.2% | 16.8% |
| 3uboB00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.55 | 43.0 | 2.68e-01 | 97.7% | 60.6% |
| 3kihC01 | 2.20.25.510 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.55 | 35.0 | 3.79e-01 | 86.4% | 76.5% |
| 2uzzA02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.55 | 45.0 | 2.99e-01 | 95.5% | 72.3% |
| 1r0vA01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.54 | 42.0 | 3.66e-01 | 90.9% | 63.6% |
| 3pc3A03 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.54 | 39.0 | 2.93e-01 | 88.6% | 49.3% |
| 7jl1B01 | 2.60.120.920 | Mainly Beta › Sandwich › Jelly Rolls › SPRY domain | 0.53 | 46.0 | 3.19e-01 | 100.0% | 33.1% |
| 1uirA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.53 | 36.0 | 3.49e-01 | 70.5% | 96.2% |
| 3n29B01 | 2.40.37.10 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 | 0.52 | 40.0 | 2.89e-01 | 90.9% | 56.3% |
| 1p65A00 | 6.10.140.90 | Special › Helix non-globular › Helix Hairpins › | 0.50 | 31.0 | 2.89e-01 | 81.8% | 42.1% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4185251 | 2003.1.5.38 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › SAM_MT | 0.65 | 50.0 | 3.10e-01 | 88.6% | 27.0% |
| 4032846 | 1.1.4.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C | 0.64 | 54.0 | 4.14e-01 | 100.0% | 53.6% |
| 3283109 | 1.1.4.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C | 0.64 | 53.0 | 4.10e-01 | 100.0% | 50.9% |
| 3166885 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.64 | 50.0 | 3.04e-01 | 95.5% | 14.5% |
| 4986214 | 1.1.4.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C | 0.63 | 52.0 | 4.21e-01 | 100.0% | 52.6% |
| 3518153 | 214.1.1.10 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7145 | 0.62 | 55.0 | 4.10e-01 | 100.0% | 42.7% |
| 3212072 | 2002.1.1.134 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 | 0.61 | 49.0 | 2.91e-01 | 90.9% | 11.5% |
| 4041343 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.60 | 36.0 | 3.52e-01 | 90.9% | 52.0% |
| 5038175 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.60 | 46.0 | 3.95e-01 | 90.9% | 62.5% |
| 4325842 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.60 | 50.0 | 3.17e-01 | 97.7% | 71.4% |
| 5014445 | 2498.2.1.0 ↗ | mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain | 0.60 | 46.0 | 3.15e-01 | 100.0% | 23.9% |
| 1488002 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.59 | 50.0 | 3.79e-01 | 100.0% | 50.4% |
| 4177685 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.58 | 39.0 | 3.40e-01 | 72.7% | 46.7% |
| 4254802 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.58 | 47.0 | 2.90e-01 | 100.0% | 23.5% |
| 4029550 | 59.1.1.2 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › RNA_pol_Rpc4 | 0.57 | 44.0 | 3.60e-01 | 100.0% | 46.3% |
| 3654105 | 292.1.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP | 0.57 | 47.0 | 2.99e-01 | 100.0% | 31.8% |
| 3343788 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.57 | 43.0 | 3.05e-01 | 86.4% | 95.0% |
| 3240771 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 38.0 | 2.45e-01 | 72.7% | 29.5% |
| 5003618 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.55 | 37.0 | 3.73e-01 | 70.5% | 93.3% |
| 3461166 | 5.1.4.414 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Lgl_C | 0.54 | 47.0 | 2.74e-01 | 100.0% | 33.8% |
| 4951012 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.54 | 37.0 | 3.54e-01 | 70.5% | 84.0% |
| 5035177 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.54 | 37.0 | 3.45e-01 | 70.5% | 77.8% |
| 3477732 | 59.1.1.0 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like | 0.53 | 47.0 | 3.63e-01 | 95.5% | 50.0% |
| 3191150 | 59.1.1.5 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Dcc1 | 0.53 | 42.0 | 3.21e-01 | 95.5% | 38.0% |
| 4992920 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.53 | 42.0 | 2.81e-01 | 100.0% | 86.5% |
| 4985100 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 36.0 | 3.51e-01 | 70.5% | 84.0% |
| 4964361 | 502.1.1.3 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › DUF7348 | 0.53 | 38.0 | 3.51e-01 | 88.6% | 62.9% |
| 3924553 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.53 | 38.0 | 3.07e-01 | 97.7% | 37.9% |
| 4890939 | 2004.1.1.735 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MT | 0.52 | 43.0 | 2.96e-01 | 97.7% | 64.7% |
| 5009920 | 2004.1.1.308 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 | 0.52 | 39.0 | 2.49e-01 | 93.2% | 90.8% |
| 4179274 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.50 | 35.0 | 2.95e-01 | 72.7% | 37.6% |
| 3511798 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.50 | 42.0 | 3.31e-01 | 100.0% | 92.4% |