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MN585993.1__QGJ90108.1__PBI_INDLULAMITHI_70__00069

Bact-Vir

MN585993.1__QGJ90108.1__PBI_INDLULAMITHI_70__00069

Identity

Accession:
MN585993 ↗
Kingdom:
phage

Quality

77.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Indlulamithivirus› Mycobacterium_phage_Indlulamithi

TaxID: 2656582

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-165
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ne3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 32.0 4.51e-01 92.9% 89.7%
3nqiA01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.68 32.0 4.49e-01 100.0% 93.8%
4jbmB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 38.0 4.44e-01 100.0% 80.2%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 40.0 4.76e-01 100.0% 91.1%
3rd4B00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 35.0 4.37e-01 100.0% 91.5%
3qwnD01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.63 32.0 4.15e-01 100.0% 92.9%
1fguB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 38.0 4.04e-01 100.0% 67.7%
6ro0D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 41.0 4.53e-01 100.0% 86.4%
2wkcB00 2.40.50.400 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Lactococcus phage single-stranded DNA binding protein 0.60 36.0 4.32e-01 100.0% 92.1%
6rupA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 42.0 4.63e-01 100.0% 90.1%
5aj3E01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.57 30.0 3.81e-01 96.4% 86.4%
2vw9B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 39.0 4.39e-01 100.0% 93.3%
3f6gA02 3.30.160.340 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 26.0 3.88e-01 95.7% 100.0%
1ae2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 34.0 4.13e-01 100.0% 97.7%
4bgjA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 42.0 4.53e-01 99.3% 99.2%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 41.0 4.30e-01 97.1% 94.3%
5iu1B00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 28.0 3.12e-01 81.4% 63.4%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3285635 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 38.0 4.58e-01 100.0% 78.9%
4932581 2.1.1.12 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.69 31.0 4.46e-01 98.6% 90.8%
3285634 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 37.0 4.54e-01 99.3% 81.1%
3508573 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 37.0 4.20e-01 100.0% 68.6%
5000502 2.1.1.12 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.68 32.0 4.02e-01 95.7% 72.9%
4593266 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.68 34.0 4.59e-01 100.0% 90.7%
3705888 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 40.0 4.39e-01 100.0% 73.0%
4004698 2.1.1.135 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.66 35.0 4.66e-01 98.6% 97.3%
3326221 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 42.0 5.03e-01 100.0% 95.8%
3393168 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 37.0 4.13e-01 100.0% 70.0%
3291641 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 39.0 4.69e-01 100.0% 88.4%
3307397 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 42.0 4.27e-01 100.0% 65.0%
3616990 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 42.0 4.64e-01 100.0% 83.6%
3283294 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 42.0 4.44e-01 100.0% 74.4%
2541776 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.63 41.0 4.61e-01 100.0% 84.4%
4958552 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 33.0 3.58e-01 100.0% 58.3%
3214812 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.63 36.0 4.19e-01 95.0% 80.9%
3492348 2.1.1.25 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.62 36.0 3.64e-01 100.0% 55.2%
3879179 2.1.1.169 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SHLD2_OB1 0.62 40.0 3.70e-01 100.0% 52.0%
4937519 2.1.1.135 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.61 39.0 4.18e-01 99.3% 73.3%
4032024 2.1.1.335 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29902 0.60 37.0 4.41e-01 100.0% 90.5%
3443030 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 31.0 3.93e-01 97.1% 83.7%
3659298 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.60 39.0 3.72e-01 100.0% 55.2%
3678038 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.60 33.0 4.26e-01 94.3% 100.0%
3673251 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.58 39.0 3.65e-01 100.0% 53.7%
4981234 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.57 28.0 3.84e-01 81.4% 98.5%
3676791 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 31.0 4.20e-01 72.1% 100.0%
3474148 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 35.0 3.73e-01 100.0% 70.8%
3279068 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 36.0 3.95e-01 100.0% 80.9%
376 2.1.1.20 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Phage_DNA_bind 0.55 34.0 4.10e-01 100.0% 97.7%
3439646 284.1.3.2 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C 0.54 30.0 3.41e-01 70.7% 71.4%
3765831 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.54 40.0 4.39e-01 99.3% 96.5%
3649749 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.53 40.0 3.42e-01 100.0% 49.6%
3589803 2484.1.1.144 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDD_Tnp_IS110 0.52 30.0 3.53e-01 80.0% 80.0%
5029255 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.52 32.0 3.58e-01 81.4% 81.0%
4003463 220.1.1.168 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Tmpp129 0.51 30.0 3.22e-01 82.9% 64.8%
3719166 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 37.0 3.90e-01 100.0% 84.0%
3418904 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.51 28.0 3.24e-01 70.0% 73.0%
3953439 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 25.0 3.25e-01 94.3% 87.1%
3781935 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.51 41.0 4.36e-01 98.6% 98.4%
4124146 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.50 42.0 4.12e-01 97.9% 82.6%
3741279 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.50 42.0 4.24e-01 97.9% 91.4%
3698360 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.50 41.0 3.91e-01 97.1% 73.5%
3272624 4210.1.1.1 ↗ a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.50 30.0 3.13e-01 80.0% 61.5%