←Back to structures

MN585993.1__QGJ90121.1__PBI_INDLULAMITHI_83__00082

Bact-Vir

MN585993.1__QGJ90121.1__PBI_INDLULAMITHI_83__00082

Identity

Accession:
MN585993 ↗
Kingdom:
phage

Quality

88.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Indlulamithivirus› Mycobacterium_phage_Indlulamithi

TaxID: 2656582

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-59
PDB
Domain cluster: rep: NC_048743.1__YP_009842800.1__HWB99_gp102__00102__D13-62
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.72 49.0 3.61e-01 70.2% 36.0%
4r8oA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.68 48.0 3.96e-01 73.7% 52.0%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.65 53.0 4.05e-01 91.2% 58.0%
5iroD00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 44.0 3.69e-01 71.9% 77.5%
3h5kA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.64 46.0 3.27e-01 77.2% 32.8%
3mvgA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.63 46.0 3.30e-01 77.2% 35.6%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 47.0 3.30e-01 86.0% 98.5%
1nioA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.62 44.0 3.24e-01 77.2% 35.8%
5ay6A01 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.59 47.0 3.39e-01 87.7% 51.5%
5nslA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 50.0 3.06e-01 100.0% 26.6%
2xg5A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 46.0 4.07e-01 93.0% 82.6%
4lduA02 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.57 44.0 3.71e-01 89.5% 58.5%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.56 39.0 4.10e-01 73.7% 90.2%
1xxmC01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.56 42.0 3.98e-01 86.0% 89.2%
7q5yB01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.55 41.0 3.28e-01 80.7% 49.2%
3akoC00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.54 43.0 3.43e-01 100.0% 79.9%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 41.0 4.11e-01 87.7% 84.2%
2vt8A00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.54 46.0 3.53e-01 100.0% 56.6%
4i93A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 42.0 3.62e-01 87.7% 92.6%
1eurA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.53 44.0 2.79e-01 100.0% 30.5%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 42.0 3.24e-01 86.0% 59.8%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 39.0 3.74e-01 87.7% 67.2%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 39.0 3.47e-01 89.5% 78.0%
4ffgA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 43.0 2.79e-01 100.0% 31.6%
2otrA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.52 42.0 3.76e-01 96.5% 93.3%
3eliA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 43.0 3.35e-01 98.2% 51.4%
3u97A00 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.52 43.0 3.95e-01 96.5% 94.8%
1zj8A03 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.52 42.0 3.23e-01 100.0% 69.7%
8gq6A01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.52 43.0 2.81e-01 100.0% 22.9%
2fauA02 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 38.0 3.01e-01 82.5% 76.6%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.52 41.0 3.84e-01 98.2% 97.5%
1z2nX02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 42.0 3.38e-01 87.7% 80.7%
1nqzA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.51 41.0 3.13e-01 100.0% 50.9%
3l4gC04 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 43.0 2.81e-01 98.2% 29.9%
7vd7A01 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.51 41.0 3.61e-01 94.7% 87.0%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.51 38.0 3.55e-01 80.7% 77.5%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.51 35.0 2.92e-01 77.2% 80.8%
4l68A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 41.0 3.43e-01 94.7% 98.2%
6x6aA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 41.0 2.76e-01 100.0% 48.4%
1bp1A01 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.51 35.0 2.51e-01 71.9% 62.8%
2ewvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 38.0 3.33e-01 89.5% 79.4%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3551723 223.2.1.4 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN 0.68 55.0 4.01e-01 91.2% 54.4%
4998603 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.63 52.0 4.87e-01 96.5% 97.3%
4218441 5.1.7.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › BNR, Sortilin-Vps10 0.63 56.0 3.05e-01 100.0% 7.5%
3794471 5.1.3.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.62 54.0 3.33e-01 100.0% 17.2%
3932146 11.1.4.92 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › VPS13_VAB 0.62 50.0 4.32e-01 94.7% 100.0%
5057291 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.62 38.0 4.31e-01 93.0% 100.0%
3932344 5.1.3.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.62 54.0 3.35e-01 100.0% 19.7%
3199354 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.62 42.0 2.55e-01 70.2% 22.8%
4937915 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.62 51.0 4.32e-01 94.7% 83.8%
4132501 5.1.7.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 0.62 55.0 2.95e-01 100.0% 7.0%
4499269 5.1.7.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 0.61 54.0 3.13e-01 100.0% 14.9%
2057235 4312.1.1.5 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › RelE 0.61 49.0 4.05e-01 91.2% 70.4%
4028464 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 40.0 2.58e-01 73.7% 13.3%
3518369 11.1.4.92 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › VPS13_VAB 0.61 48.0 4.11e-01 94.7% 95.2%
3987799 4221.1.1.1 ↗ a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like › DUF1797 0.60 40.0 3.78e-01 73.7% 55.7%
3591940 223.2.1.19 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.60 49.0 3.45e-01 93.0% 44.2%
4021641 59.1.1.0 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like 0.60 52.0 4.03e-01 100.0% 76.9%
3828070 252.1.1.0 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.59 39.0 4.00e-01 73.7% 70.9%
3267754 719.1.1.2 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.58 43.0 3.45e-01 82.5% 80.8%
4026643 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 42.0 3.70e-01 77.2% 75.3%
3926438 304.48.1.37 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_2 0.58 43.0 2.89e-01 98.2% 18.8%
4941547 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.58 44.0 3.83e-01 89.5% 92.0%
3489061 223.1.1.71 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › VGCC_alpha2 0.58 44.0 3.38e-01 89.5% 65.2%
3829068 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.57 51.0 3.34e-01 98.2% 40.9%
4018808 719.1.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.57 46.0 3.53e-01 86.0% 48.3%
4970648 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.57 39.0 4.07e-01 70.2% 100.0%
3700285 330.1.1.22 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26536 0.57 45.0 3.46e-01 87.7% 90.4%
4028728 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.57 38.0 3.90e-01 70.2% 87.3%
5065641 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 47.0 3.58e-01 96.5% 48.7%
4011184 11.1.4.92 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › VPS13_VAB 0.57 44.0 3.77e-01 94.7% 100.0%
2531914 271.1.1.1 ↗ beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.57 45.0 3.64e-01 96.5% 86.2%
5056920 2004.1.1.58 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase 0.56 43.0 2.81e-01 89.5% 25.9%
3321190 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 46.0 2.94e-01 100.0% 43.6%
4816211 271.1.1.1 ↗ beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.55 43.0 3.49e-01 96.5% 83.8%
3973870 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 44.0 2.99e-01 96.5% 33.3%
3802472 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.54 46.0 2.96e-01 100.0% 34.8%
4773326 271.1.1.1 ↗ beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.54 43.0 3.40e-01 100.0% 77.6%
3992138 11.2.1.52 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_nem 0.54 43.0 3.36e-01 98.2% 87.3%
3515104 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 41.0 3.66e-01 94.7% 97.0%
3303919 59.1.1.16 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › PF30948 0.53 48.0 3.98e-01 98.2% 85.3%
4542815 223.1.1.12 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 0.53 42.0 3.36e-01 96.5% 58.6%
3639482 220.1.1.211 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7612 0.53 40.0 3.03e-01 82.5% 85.7%
4866061 223.1.1.12 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 0.53 41.0 3.64e-01 96.5% 80.4%
3520079 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 41.0 3.34e-01 86.0% 79.1%
3553132 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 43.0 2.43e-01 100.0% 10.8%
3866143 5.1.3.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b 0.52 45.0 2.90e-01 100.0% 24.4%
3390712 827.1.1.0 ↗ a+b two layers › Integrin beta tail domain › Integrin beta tail domain › Integrin beta tail domain 0.52 43.0 3.83e-01 100.0% 97.8%
3485875 827.1.1.0 ↗ a+b two layers › Integrin beta tail domain › Integrin beta tail domain › Integrin beta tail domain 0.51 42.0 3.62e-01 94.7% 57.9%
3227424 331.18.1.8 ↗ a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › BBS7_pf 0.51 40.0 3.41e-01 96.5% 49.5%
3391303 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 44.0 2.74e-01 100.0% 15.3%
2979129 919.1.1.1 ↗ few secondary structure elements › Ribosomal protein L36 › Ribosomal protein L36 › Ribosomal protein L36 › Ribosomal_L36 0.51 35.0 3.84e-01 87.7% 91.3%
4360067 896.1.1.1 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e 0.50 41.0 3.70e-01 91.2% 73.4%