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MN586002.1__QGJ90941.1__SEA_BIANCATRI92_41__00041
Bact-VirMN586002.1__QGJ90941.1__SEA_BIANCATRI92_41__00041
Identity
- Accession:
- MN586002 ↗
- Kingdom:
- phage
Quality
84.5
mean pLDDT
Taxonomy
TaxID: 2656559
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-57
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5dymA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 62.0 | 5.03e-01 | 100.0% | 47.9% |
| 3h4rA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.72 | 61.0 | 3.88e-01 | 91.8% | 62.1% |
| 3syyA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.71 | 58.0 | 3.80e-01 | 87.8% | 63.9% |
| 8jx6A02 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 50.0 | 4.06e-01 | 93.9% | 40.8% |
| 3venA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.66 | 54.0 | 3.54e-01 | 100.0% | 20.6% |
| 4mt4A00 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.64 | 54.0 | 3.10e-01 | 91.8% | 65.3% |
| 3t5tB01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.62 | 48.0 | 2.95e-01 | 83.7% | 96.2% |
| 3upuA03 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 54.0 | 3.93e-01 | 100.0% | 83.2% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.60 | 55.0 | 3.46e-01 | 100.0% | 56.5% |
| 2wxfA02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.59 | 44.0 | 3.36e-01 | 81.6% | 79.0% |
| 5b55A01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 43.0 | 2.89e-01 | 81.6% | 30.0% |
| 6uqjA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.56 | 41.0 | 2.47e-01 | 89.8% | 11.0% |
| 2i9dA00 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.56 | 42.0 | 2.74e-01 | 81.6% | 93.9% |
| 3mk7C01 | 6.10.280.130 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 48.0 | 3.95e-01 | 100.0% | 62.8% |
| 1ciaA00 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.52 | 45.0 | 2.90e-01 | 93.9% | 92.0% |
| 2p92A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.51 | 46.0 | 3.62e-01 | 95.9% | 49.5% |
| 5mu3B00 | 3.40.50.12050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 46.0 | 3.12e-01 | 100.0% | 30.7% |
| 1k8kA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.51 | 35.0 | 2.94e-01 | 73.5% | 39.1% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4054285 | 5.1.4.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 | 0.89 | 53.0 | 2.95e-01 | 100.0% | 6.0% |
| 3921728 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.82 | 66.0 | 4.96e-01 | 100.0% | 37.4% |
| 3799597 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.80 | 64.0 | 5.28e-01 | 100.0% | 50.6% |
| 3786015 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.76 | 53.0 | 2.90e-01 | 73.5% | 42.4% |
| 3994884 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.73 | 65.0 | 3.93e-01 | 100.0% | 29.4% |
| 3939832 | 2006.1.6.39 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Mat89Bb | 0.73 | 62.0 | 3.90e-01 | 93.9% | 66.5% |
| 3938245 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.72 | 62.0 | 4.01e-01 | 95.9% | 41.6% |
| 3285877 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.71 | 59.0 | 3.74e-01 | 89.8% | 46.7% |
| 4026560 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.69 | 51.0 | 4.08e-01 | 79.6% | 39.0% |
| 5073431 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.68 | 57.0 | 3.23e-01 | 93.9% | 73.1% |
| 3480000 | 5001.1.1.5 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 | 0.67 | 59.0 | 3.63e-01 | 100.0% | 16.3% |
| 4995788 | 3218.1.1.0 ↗ | a+b duplicates or obligate multimers › small terminase oligomerization domain › small terminase oligomerization domain › small terminase oligomerization domain | 0.67 | 46.0 | 4.49e-01 | 83.7% | 66.0% |
| 3896408 | 5001.1.1.5 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 | 0.67 | 55.0 | 3.50e-01 | 100.0% | 17.5% |
| 3939245 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.67 | 57.0 | 3.45e-01 | 100.0% | 13.5% |
| 4478999 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.67 | 57.0 | 3.89e-01 | 95.9% | 59.5% |
| 4988512 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.65 | 55.0 | 3.65e-01 | 91.8% | 97.2% |
| None | — | 0.65 | 56.0 | 3.34e-01 | 93.9% | 67.8% | |
| 3220485 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.65 | 52.0 | 3.14e-01 | 91.8% | 20.0% |
| 4882651 | 2003.1.2.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GMC_oxred_C | 0.65 | 52.0 | 3.97e-01 | 95.9% | 39.5% |
| 4863102 | 244.1.1.9 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › GMC_oxred_C | 0.64 | 52.0 | 3.84e-01 | 95.9% | 33.6% |
| 3880867 | 2484.1.1.145 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 | 0.64 | 58.0 | 3.39e-01 | 100.0% | 83.7% |
| 4456198 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 55.0 | 3.70e-01 | 100.0% | 41.1% |
| 4527101 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.63 | 55.0 | 3.83e-01 | 100.0% | 48.1% |
| 4985036 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.62 | 55.0 | 3.77e-01 | 100.0% | 45.9% |
| 4974744 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.62 | 53.0 | 3.64e-01 | 98.0% | 44.0% |
| 3575090 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.62 | 55.0 | 3.71e-01 | 100.0% | 28.3% |
| 3740226 | 5051.1.1.7 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Nramp | 0.62 | 54.0 | 3.10e-01 | 98.0% | 10.9% |
| 3484809 | 4096.1.1.1 ↗ | a+b two layers › NAP-like › NAP-like › NAP-like › NAP | 0.61 | 43.0 | 3.15e-01 | 75.5% | 26.4% |
| 3367891 | 109.4.1.1272 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif | 0.61 | 44.0 | 2.69e-01 | 77.6% | 82.8% |
| 3170708 | 632.1.1.6 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Pho88 | 0.61 | 55.0 | 3.77e-01 | 100.0% | 32.4% |
| 3649913 | 5050.1.1.58 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › NFD4_C | 0.59 | 54.0 | 3.65e-01 | 100.0% | 73.5% |
| 3988478 | 857.1.1.1 ↗ | a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › ZapA | 0.59 | 52.0 | 4.07e-01 | 95.9% | 72.4% |
| 3328712 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.59 | 48.0 | 3.22e-01 | 100.0% | 43.5% |
| 4642235 | 3745.1.1.1 ↗ | alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex | 0.59 | 52.0 | 3.09e-01 | 100.0% | 65.0% |
| 3330041 | 101.1.2.303 ↗ | alpha arrays › HTH › HTH › winged helix domain › RPC5 | 0.57 | 41.0 | 2.94e-01 | 77.6% | 24.5% |
| 3935630 | 3346.1.1.0 ↗ | a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 | 0.57 | 53.0 | 3.37e-01 | 98.0% | 70.2% |
| 4018584 | 6155.1.1.15 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › DUF846 | 0.57 | 51.0 | 3.54e-01 | 98.0% | 92.0% |
| 3703262 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.57 | 42.0 | 3.42e-01 | 87.8% | 40.0% |
| 4874840 | 704.1.1.1 ↗ | beta complex topology › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) › CoV_nucleocap | 0.55 | 36.0 | 3.05e-01 | 81.6% | 39.5% |
| 3595211 | 3501.1.1.0 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 | 0.54 | 50.0 | 4.07e-01 | 100.0% | 96.5% |
| 3590878 | 7569.1.1.1 ↗ | a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG | 0.52 | 38.0 | 2.69e-01 | 89.8% | 52.9% |
| 4280539 | 109.21.1.8 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 | 0.52 | 37.0 | 2.10e-01 | 83.7% | 5.4% |
| 3211783 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 35.0 | 3.08e-01 | 73.5% | 90.6% |
| 5018200 | 2004.1.1.220 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SWI2_SNF2 | 0.51 | 39.0 | 2.27e-01 | 89.8% | 95.9% |