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MN586014.1__QGJ91971.1__SEA_KEELAN_6__00006

Bact-Vir

MN586014.1__QGJ91971.1__SEA_KEELAN_6__00006

Identity

Accession:
MN586014 ↗
Kingdom:
phage

Quality

87.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ronaldovirus› Gordonia_phage_Keelan

TaxID: 2656537

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-56
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4xt1A00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.67 55.0 3.50e-01 96.2% 52.2%
2czrA02 3.90.79.30 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › TBP-interacting protein, C-terminal domain 0.62 38.0 2.98e-01 84.9% 26.7%
4ktwA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.60 49.0 3.57e-01 94.3% 53.1%
3vw7A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.60 48.0 3.11e-01 94.3% 70.6%
4ottA02 1.10.246.130 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain 0.57 46.0 3.64e-01 94.3% 96.7%
5zjgA02 1.10.246.130 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain 0.55 45.0 3.62e-01 96.2% 95.5%
1zq1A02 3.40.50.1170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › L-asparaginase, N-terminal domain 0.54 44.0 2.99e-01 96.2% 91.4%
4q5eA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 36.0 3.09e-01 73.6% 64.5%
1gu2A00 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.51 38.0 2.99e-01 83.0% 85.5%
1xo1A02 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.51 42.0 3.13e-01 100.0% 88.7%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3238459 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.74 63.0 5.94e-01 100.0% 80.0%
3867404 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.74 57.0 5.46e-01 83.0% 75.0%
3404628 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.64 43.0 2.65e-01 71.7% 19.1%
4954781 2007.1.14.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › ZnuA 0.61 51.0 3.80e-01 98.1% 91.3%
4208157 5069.1.2.1 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Respiratory nitrate reductase 1 gamma chain › Nitrate_red_gam 0.61 50.0 3.30e-01 100.0% 41.5%
3548818 5001.1.1.111 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw 0.60 48.0 3.09e-01 98.1% 54.8%
3213060 5001.1.1.44 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.59 45.0 2.89e-01 92.5% 53.0%
5019209 109.2.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_15 0.58 48.0 3.19e-01 96.2% 37.4%
3978015 633.16.2.2 ↗ alpha bundles › Bromodomain-like › PMT helical bundle domain-like › N-terminal domain of antitoxin HigA › PF29431 0.58 45.0 4.05e-01 88.7% 61.3%
5004202 304.51.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › RAMPs 0.57 48.0 3.35e-01 100.0% 96.8%
1165137 109.2.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.56 43.0 3.25e-01 90.6% 44.4%
2875633 304.55.1.8 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › TrwC 0.55 46.0 2.94e-01 100.0% 99.0%
3378291 109.4.1.2216 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, Eplus_motif 0.54 45.0 2.62e-01 100.0% 12.2%
3203770 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 38.0 3.82e-01 84.9% 74.5%
5056205 2485.1.1.67 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GILT 0.54 42.0 2.91e-01 90.6% 42.0%
3682973 109.4.1.2641 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2, DYW_deaminase, Eplus_motif 0.53 43.0 2.76e-01 100.0% 21.6%
3307205 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.53 43.0 3.42e-01 98.1% 56.8%
3931230 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 39.0 3.84e-01 94.3% 96.9%
3396061 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.51 41.0 2.61e-01 96.2% 30.6%
4937437 101.8.1.4 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f 0.50 36.0 2.44e-01 83.0% 21.3%
3215545 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.50 38.0 2.54e-01 96.2% 54.0%