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MN586020.1__QGJ92687.1__PBI_MEGAN_17__00017
Bact-VirMN586020.1__QGJ92687.1__PBI_MEGAN_17__00017
Identity
- Accession:
- MN586020 ↗
- Kingdom:
- phage
Quality
77.5
mean pLDDT
Taxonomy
TaxID: 2656551
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-89
Domain cluster:
rep: NC_049473.1__YP_009884843.1__HYQ03_gp35__00035__D2-71
D2
high
residues 114-188
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2x48A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.77 | 49.0 | 5.60e-01 | 72.0% | 88.9% |
| 1r71A01 | 1.10.10.730 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain | 0.76 | 52.0 | 5.79e-01 | 70.7% | 100.0% |
| 1a9xA04 | 1.10.1030.10 | Mainly Alpha › Orthogonal Bundle › Carbamoyl Phosphate Synthetase; Chain A, domain 4 › Carbamoyl-phosphate synthetase, large subunit oligomerisation domain | 0.74 | 59.0 | 4.77e-01 | 92.0% | 44.0% |
| 5douA01 | 1.10.1030.10 | Mainly Alpha › Orthogonal Bundle › Carbamoyl Phosphate Synthetase; Chain A, domain 4 › Carbamoyl-phosphate synthetase, large subunit oligomerisation domain | 0.74 | 59.0 | 4.58e-01 | 92.0% | 38.6% |
| 2qeuB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.74 | 57.0 | 4.60e-01 | 80.0% | 57.9% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.73 | 54.0 | 4.65e-01 | 78.7% | 96.6% |
| 3c1yA02 | 1.20.1260.110 | Mainly Alpha › Up-down Bundle › Ferritin › DNA integrity scanning linker region | 0.69 | 63.0 | 5.00e-01 | 100.0% | 90.5% |
| 1aisB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.69 | 51.0 | 4.69e-01 | 77.3% | 80.9% |
| 6l25A00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.68 | 53.0 | 3.60e-01 | 82.7% | 30.6% |
| 5xe7A01 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.68 | 56.0 | 4.53e-01 | 90.7% | 98.6% |
| 2lfwA01 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.67 | 53.0 | 4.28e-01 | 85.3% | 92.2% |
| 1yixA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.67 | 52.0 | 3.49e-01 | 82.7% | 29.4% |
| 1xwyA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.67 | 49.0 | 3.39e-01 | 78.7% | 31.9% |
| 2w9zA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.66 | 51.0 | 4.15e-01 | 81.3% | 66.9% |
| 4w9rA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.65 | 46.0 | 4.25e-01 | 78.7% | 58.5% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.63 | 47.0 | 4.19e-01 | 77.3% | 76.7% |
| 5zyrA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 37.0 | 2.98e-01 | 100.0% | 29.1% |
| 5jbrA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 43.0 | 4.19e-01 | 74.7% | 75.6% |
| 1g3nC01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.61 | 47.0 | 4.02e-01 | 82.7% | 66.7% |
| 4mo7A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.60 | 53.0 | 4.34e-01 | 100.0% | 96.5% |
| 2oc5A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.60 | 53.0 | 3.84e-01 | 100.0% | 74.4% |
| 1quuA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 47.0 | 4.04e-01 | 88.0% | 84.1% |
| 2dg8D00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.59 | 49.0 | 3.87e-01 | 97.3% | 72.8% |
| 3e2vB00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.58 | 48.0 | 3.12e-01 | 92.0% | 75.4% |
| 8amzO01 | 1.25.40.570 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.58 | 46.0 | 3.03e-01 | 89.3% | 52.6% |
| 2xioA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.57 | 50.0 | 3.35e-01 | 97.3% | 92.8% |
| 3lstA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 40.0 | 3.86e-01 | 74.7% | 90.7% |
| 2xkoA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 42.0 | 3.94e-01 | 81.3% | 77.7% |
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.56 | 39.0 | 3.86e-01 | 72.0% | 93.7% |
| 1zarA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 40.0 | 3.77e-01 | 77.3% | 76.4% |
| 3r0aA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 37.0 | 3.26e-01 | 76.0% | 53.3% |
| 2k9lA00 | 1.10.10.1330 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA polymerase sigma-54 factor, core-binding domain | 0.52 | 39.0 | 3.92e-01 | 78.7% | 89.5% |
| 3gwzA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 43.0 | 4.14e-01 | 98.7% | 88.8% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4355360 | 101.1.2.40 ↗ | alpha arrays › HTH › HTH › winged helix domain › CPSase_L_D3 | 0.81 | 67.0 | 5.27e-01 | 92.0% | 44.7% |
| 3278077 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.79 | 57.0 | 6.29e-01 | 76.0% | 98.3% |
| 5040755 | 101.1.1.251 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_ParB | 0.79 | 60.0 | 5.36e-01 | 81.3% | 61.9% |
| 4518397 | 101.1.2.40 ↗ | alpha arrays › HTH › HTH › winged helix domain › CPSase_L_D3 | 0.77 | 60.0 | 4.76e-01 | 90.7% | 42.0% |
| 4947271 | 101.1.2.936 ↗ | alpha arrays › HTH › HTH › winged helix domain › CPSase_L_D1 | 0.76 | 63.0 | 5.00e-01 | 92.0% | 45.8% |
| 5062650 | 101.1.2.40 ↗ | alpha arrays › HTH › HTH › winged helix domain › CPSase_L_D3 | 0.76 | 59.0 | 4.96e-01 | 92.0% | 50.4% |
| 3944370 | 101.1.1.318 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF30335 | 0.76 | 54.0 | 5.58e-01 | 74.7% | 87.1% |
| 2628410 | 101.1.1.86 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Raf1_HTH | 0.76 | 57.0 | 5.98e-01 | 80.0% | 92.4% |
| 3677692 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.75 | 62.0 | 4.84e-01 | 86.7% | 65.5% |
| 4487757 | 101.1.2.40 ↗ | alpha arrays › HTH › HTH › winged helix domain › CPSase_L_D3 | 0.73 | 61.0 | 4.79e-01 | 92.0% | 48.8% |
| 3942571 | 101.1.1.198 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › KorB | 0.73 | 52.0 | 5.52e-01 | 76.0% | 92.3% |
| 3512795 | 101.1.10.9 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin | 0.71 | 53.0 | 4.05e-01 | 77.3% | 51.9% |
| 4411930 | 101.1.2.40 ↗ | alpha arrays › HTH › HTH › winged helix domain › CPSase_L_D3 | 0.71 | 61.0 | 4.92e-01 | 96.0% | 62.1% |
| 5016203 | 101.1.2.40 ↗ | alpha arrays › HTH › HTH › winged helix domain › CPSase_L_D3 | 0.69 | 60.0 | 4.79e-01 | 100.0% | 63.7% |
| 3739076 | 109.4.1.1362 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG5_C | 0.69 | 57.0 | 3.82e-01 | 90.7% | 44.6% |
| 3942205 | 109.4.1.2524 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IcmF-related | 0.68 | 59.0 | 4.04e-01 | 96.0% | 63.5% |
| 3204144 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.67 | 49.0 | 4.10e-01 | 77.3% | 59.2% |
| 5023608 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.67 | 51.0 | 4.21e-01 | 80.0% | 85.4% |
| 3815027 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.67 | 52.0 | 4.02e-01 | 85.3% | 40.0% |
| 3899442 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 52.0 | 4.02e-01 | 85.3% | 40.6% |
| 3676572 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.64 | 45.0 | 3.46e-01 | 74.7% | 73.7% |
| 3358824 | 109.52.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › FRIGIDA flowering-time regulator › FRIGIDA flowering-time regulator › Frigida | 0.63 | 52.0 | 3.42e-01 | 90.7% | 21.6% |
| 3905342 | 3579.1.1.1 ↗ | extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › Oxidored_q3 | 0.63 | 53.0 | 3.96e-01 | 89.3% | 41.8% |
| 4994028 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 54.0 | 4.82e-01 | 96.0% | 79.0% |
| 4964523 | 101.1.1.538 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CPSase_L_D3 | 0.59 | 51.0 | 4.12e-01 | 96.0% | 62.1% |
| 4980377 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.53 | 45.0 | 3.41e-01 | 100.0% | 36.2% |
| 4965902 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 36.0 | 3.24e-01 | 72.0% | 50.5% |
| 4132207 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.52 | 43.0 | 3.52e-01 | 93.3% | 74.5% |