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MN586021.1__QGJ92876.1__PBI_BEAGLE_119__00119
Bact-VirMN586021.1__QGJ92876.1__PBI_BEAGLE_119__00119
Identity
- Accession:
- MN586021 ↗
- Kingdom:
- phage
Quality
90.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 5-62
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4e1pA00 | 3.30.60.230 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain | 0.72 | 47.0 | 4.90e-01 | 70.7% | 72.7% |
| 2ffwA00 | 4.10.830.40 | Few Secondary Structures › Irregular › 30s Ribosomal Protein S14; Chain N › | 0.63 | 50.0 | 4.54e-01 | 86.2% | 66.7% |
| 2f4nA01 | 3.40.50.10790 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal | 0.54 | 40.0 | 3.09e-01 | 82.8% | 74.3% |
| 4wz2C00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.53 | 41.0 | 3.91e-01 | 89.7% | 74.3% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3474551 | 904.1.1.0 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain | 0.76 | 65.0 | 6.42e-01 | 91.4% | 90.0% |
| 4964347 | 904.1.1.55 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › PF26046 | 0.72 | 53.0 | 5.85e-01 | 84.5% | 100.0% |
| 3514286 | 904.1.1.2 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › CEBP_ZZ | 0.70 | 59.0 | 6.05e-01 | 91.4% | 100.0% |
| 4470999 | 904.1.1.2 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › CEBP_ZZ | 0.64 | 53.0 | 4.98e-01 | 91.4% | 81.4% |
| 3306185 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.63 | 52.0 | 4.20e-01 | 100.0% | 45.8% |
| None | — | 0.63 | 55.0 | 3.98e-01 | 100.0% | 34.5% | |
| 4965516 | 377.1.1.132 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF7561 | 0.63 | 42.0 | 4.13e-01 | 70.7% | 92.3% |
| 3362593 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.61 | 46.0 | 3.79e-01 | 84.5% | 76.1% |
| 3803666 | 377.1.1.12 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-C5HC2 | 0.61 | 50.0 | 3.86e-01 | 100.0% | 40.0% |
| 3844612 | 376.1.1.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ | 0.60 | 48.0 | 4.75e-01 | 93.1% | 85.0% |
| 3371338 | 377.1.1.12 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-C5HC2 | 0.59 | 49.0 | 3.76e-01 | 100.0% | 40.7% |
| 3947959 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.56 | 45.0 | 3.83e-01 | 93.1% | 95.0% |
| 3989139 | 4.1.1.297 ↗ | beta barrels › SH3 › SH3 › SH3 › YajC | 0.54 | 34.0 | 3.30e-01 | 70.7% | 56.9% |
| 4946461 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.53 | 43.0 | 3.04e-01 | 100.0% | 54.3% |
D2
medium
residues 70-100
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gqeA01 | 1.20.58.410 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Release factor | 0.89 | 70.0 | 4.65e-01 | 87.1% | 24.8% |
| 1vmgA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.89 | 70.0 | 5.05e-01 | 87.1% | 34.1% |
| 3ltoA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.87 | 70.0 | 4.50e-01 | 90.3% | 52.2% |
| 3t46A00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.87 | 67.0 | 5.03e-01 | 87.1% | 37.3% |
| 3ihuA02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.85 | 77.0 | 4.90e-01 | 100.0% | 49.6% |
| 3lcvB02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.84 | 72.0 | 4.32e-01 | 100.0% | 49.0% |
| 1wkbA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.80 | 66.0 | 4.45e-01 | 100.0% | 57.9% |
| 2csxA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.80 | 67.0 | 4.24e-01 | 100.0% | 57.7% |
| 4k51B00 | 1.25.40.860 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.79 | 62.0 | 3.99e-01 | 96.8% | 61.6% |
| 1kaeA03 | 1.20.5.1300 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.79 | 62.0 | 5.21e-01 | 87.1% | 50.9% |
| 1tkeA03 | 3.30.54.20 | Alpha Beta › 2-Layer Sandwich › Replication Terminator Protein; Chain A, domain 2 › | 0.78 | 56.0 | 4.66e-01 | 80.6% | 43.1% |
| 1h72C02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.78 | 64.0 | 4.17e-01 | 96.8% | 43.7% |
| 4ar9A02 | 1.10.390.20 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › | 0.77 | 59.0 | 3.83e-01 | 87.1% | 20.4% |
| 4g09A03 | 1.20.5.1300 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.77 | 59.0 | 5.06e-01 | 90.3% | 52.7% |
| 4tq1A03 | 1.10.246.190 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Autophagy protein Apg5, helix rich domain | 0.77 | 59.0 | 4.95e-01 | 90.3% | 48.3% |
| 4i2aA01 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.75 | 55.0 | 4.08e-01 | 90.3% | 29.8% |
| 3hqiA02 | 3.30.710.10 | Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A | 0.74 | 59.0 | 3.92e-01 | 96.8% | 38.6% |
| 5h28A02 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.72 | 57.0 | 3.96e-01 | 93.5% | 28.6% |
| 3r6nA02 | 1.20.58.1060 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 47.0 | 3.13e-01 | 87.1% | 18.1% |
| 1e52A00 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.65 | 48.0 | 4.10e-01 | 87.1% | 60.7% |
| 3cinA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.63 | 52.0 | 3.67e-01 | 100.0% | 51.9% |
| 6w6vE01 | 3.30.70.3250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribonuclease P, Pop5 subunit | 0.62 | 48.0 | 3.08e-01 | 87.1% | 19.4% |
| 4efcA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.61 | 48.0 | 3.97e-01 | 87.1% | 44.3% |
| 4d0yA00 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.60 | 51.0 | 3.18e-01 | 100.0% | 62.5% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3737843 | 2485.1.1.43 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_6 | 0.98 | 78.0 | 4.37e-01 | 83.9% | 9.5% |
| 4165434 | 192.6.1.1 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATP-synt_DE | 0.91 | 72.0 | 6.05e-01 | 87.1% | 56.0% |
| 3715868 | 375.10.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE | 0.86 | 66.0 | 5.35e-01 | 87.1% | 46.7% |
| 3448510 | 375.10.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE | 0.86 | 65.0 | 5.15e-01 | 87.1% | 43.1% |
| 3711291 | 375.10.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha | 0.85 | 67.0 | 5.41e-01 | 90.3% | 46.7% |
| 4018151 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.85 | 72.0 | 4.74e-01 | 100.0% | 63.2% |
| 3390366 | 109.4.1.142 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CSN8_PSD8_EIF3K | 0.83 | 74.0 | 5.07e-01 | 100.0% | 36.0% |
| 3370800 | 3711.1.1.4 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › DOG1 | 0.83 | 65.0 | 3.95e-01 | 90.3% | 14.4% |
| 5023965 | 304.1.1.1 ↗ | a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C | 0.81 | 62.0 | 4.10e-01 | 90.3% | 44.6% |
| 3336946 | 192.1.1.14 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › MPH2 | 0.81 | 64.0 | 5.21e-01 | 90.3% | 46.7% |
| 3168863 | 109.3.1.170 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_4 | 0.78 | 66.0 | 3.85e-01 | 100.0% | 12.4% |
| 3734725 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.75 | 64.0 | 3.50e-01 | 100.0% | 6.1% |
| 4214371 | 7524.1.1.2 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Histidinol_dh | 0.74 | 56.0 | 3.15e-01 | 87.1% | 7.2% |
| 3330016 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.70 | 57.0 | 4.00e-01 | 96.8% | 28.1% |