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MN586021.1__QGJ92880.1__PBI_BEAGLE_123__00123

Bact-Vir

MN586021.1__QGJ92880.1__PBI_BEAGLE_123__00123

Identity

Accession:
MN586021 ↗
Kingdom:
phage

Quality

64.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Arthrobacter_phage_Beagle

TaxID: 2656522

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 93-155
PDB
Domain cluster: rep: OK040794.1__UDL16729.1__SEA_ATUIN_135__00135__D129-187
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5byuA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 50.0 4.04e-01 100.0% 64.1%
2cwzA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 47.0 3.80e-01 100.0% 59.1%
6gmhH01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 45.0 3.56e-01 96.8% 77.1%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.54 40.0 3.22e-01 81.0% 99.2%
1k82B01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.53 44.0 3.67e-01 100.0% 73.2%
6zgqA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.53 43.0 3.34e-01 92.1% 100.0%
1wjmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 39.0 3.12e-01 81.0% 82.1%
4kc7A02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.51 36.0 3.13e-01 74.6% 100.0%
2lvlA01 2.170.150.60 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › 0.51 43.0 3.58e-01 95.2% 88.5%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4250025 222.1.1.8 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_2 0.61 51.0 4.12e-01 100.0% 63.7%
3689409 222.1.1.4 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.61 52.0 4.28e-01 100.0% 73.3%
4013646 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.60 51.0 4.05e-01 100.0% 62.9%
3728530 222.1.1.4 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.60 51.0 3.97e-01 100.0% 57.3%
3286916 206.1.1.56 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF2252 0.58 50.0 3.12e-01 100.0% 31.3%
4003377 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.58 47.0 2.94e-01 88.9% 60.9%
4420993 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 31.0 2.57e-01 100.0% 27.8%
5023738 11.1.1.1443 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29994 0.58 42.0 3.65e-01 100.0% 47.3%
3664762 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.58 43.0 3.14e-01 79.4% 77.1%
4202520 222.1.1.17 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.58 50.0 3.91e-01 100.0% 60.7%
5072302 2484.1.1.32 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_C 0.57 43.0 2.88e-01 100.0% 21.3%
4346913 222.1.1.17 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.57 47.0 3.71e-01 100.0% 65.2%
4942841 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.56 40.0 3.37e-01 100.0% 41.7%
4429745 222.1.1.17 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.56 47.0 3.67e-01 98.4% 62.7%
4021640 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.56 45.0 3.48e-01 95.2% 56.9%
4982336 7580.1.1.1 ↗ a/b three-layered sandwiches › RibA-like › RibA-like › RibA-like › GTP_cyclohydro2 0.55 39.0 2.85e-01 79.4% 77.6%
3289663 207.11.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.53 45.0 3.22e-01 100.0% 46.3%
3829625 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 43.0 3.41e-01 90.5% 63.2%
3432106 243.3.1.19 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.53 41.0 3.39e-01 100.0% 45.1%
184825 270.2.1.1 ↗ beta barrels › FMT C-terminal domain-like › lantibiotic immunity protein SpaI › lantibiotic immunity protein SpaI › Spa1_C 0.51 43.0 3.45e-01 95.2% 78.1%
4026816 864.1.1.1 ↗ a+b two layers › DLC › DLC › DLC › Dynein_light 0.51 40.0 3.51e-01 88.9% 90.0%
3220501 864.1.1.0 ↗ a+b two layers › DLC › DLC › DLC 0.51 41.0 3.79e-01 92.1% 88.2%
4012683 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 44.0 2.77e-01 96.8% 94.1%
3785709 5.1.4.32 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.50 40.0 2.47e-01 88.9% 24.1%