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MN586027.1__QGJ93546.1__SEA_MUFASA8_99__00099

Bact-Vir

MN586027.1__QGJ93546.1__SEA_MUFASA8_99__00099

Identity

Accession:
MN586027 ↗
Kingdom:
phage

Quality

87.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-55
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10979.14 best DUF2786 54.0 1.80e-14 72.7% 92.5%
D2 medium residues 61-111_188-211
PDB
Domain cluster: representative
CATH (73)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vs7A02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.75 49.0 4.85e-01 72.0% 64.1%
5suhA02 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.74 49.0 4.37e-01 74.7% 49.5%
4aybL00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.71 49.0 4.61e-01 74.7% 59.3%
7qh2C03 3.30.70.2740 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 47.0 4.73e-01 74.7% 67.9%
1usmA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.70 47.0 4.69e-01 81.3% 67.5%
2lu1A00 3.30.70.2370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 48.0 4.60e-01 73.3% 76.4%
2anrA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.69 49.0 4.98e-01 74.7% 76.0%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.68 50.0 4.37e-01 94.7% 52.3%
4qmfB01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.68 46.0 4.47e-01 74.7% 63.4%
2axyA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.68 48.0 4.96e-01 74.7% 77.8%
2f1fA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.68 46.0 4.58e-01 76.0% 67.1%
4ctaA02 3.30.70.2860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 45.0 4.56e-01 74.7% 69.3%
2jzxA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.67 48.0 4.75e-01 74.7% 74.7%
7dl8C01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.67 48.0 4.56e-01 76.0% 64.0%
4dzrA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.66 43.0 3.36e-01 84.0% 30.7%
1j4wA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.66 47.0 4.79e-01 74.7% 78.4%
3qwuA03 3.30.70.2160 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 49.0 4.04e-01 80.0% 47.5%
2ifxA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 47.0 4.46e-01 74.7% 65.9%
3c19A01 3.30.70.1380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transcriptional regulatory protein pf0864 domain like 0.65 53.0 4.84e-01 88.0% 87.9%
3s1tA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.65 44.0 4.35e-01 70.7% 70.0%
2re1A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.64 42.0 4.27e-01 76.0% 67.6%
2ln3A00 3.30.110.140 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.64 47.0 4.56e-01 77.3% 100.0%
1ygyA04 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.64 42.0 4.26e-01 73.3% 67.1%
1vm0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.64 46.0 4.31e-01 76.0% 63.4%
3i3wA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.64 44.0 4.41e-01 72.0% 74.0%
3kdgA02 3.30.1370.100 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › MutL, C-terminal domain, regulatory subdomain 0.64 40.0 3.78e-01 74.7% 51.1%
3n0vA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 43.0 4.20e-01 72.0% 64.3%
1q5yC00 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.62 42.0 4.08e-01 74.7% 63.4%
2dt9A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 41.0 4.16e-01 74.7% 68.9%
3d7aA01 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.62 41.0 3.43e-01 76.0% 37.5%
2op5B01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 43.0 3.99e-01 74.7% 66.0%
3mwbB03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 43.0 4.07e-01 76.0% 92.6%
3e3xA02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 43.0 4.08e-01 76.0% 84.0%
5fxdA03 3.40.462.10 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain 0.61 54.0 3.82e-01 100.0% 84.1%
1qltA03 3.40.462.10 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain 0.61 53.0 3.79e-01 98.7% 83.1%
5fiiB00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 42.0 4.16e-01 74.7% 69.2%
1f0xA04 3.30.1370.20 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › D-lactate dehydrogenase, cap domain, subdomain 2 0.61 42.0 4.05e-01 74.7% 63.5%
3gwmA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.60 44.0 3.74e-01 78.7% 100.0%
4ozjA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 48.0 4.35e-01 88.0% 85.6%
2rhqB06 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.60 42.0 4.16e-01 76.0% 72.3%
2ebbA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.60 46.0 4.28e-01 84.0% 78.1%
3n79A01 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.60 49.0 4.90e-01 89.3% 100.0%
4o1pD02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.59 42.0 2.96e-01 76.0% 64.5%
1dcoA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.59 45.0 4.14e-01 84.0% 78.8%
6wcsA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.58 41.0 3.07e-01 76.0% 59.8%
3zxoA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.58 41.0 3.52e-01 74.7% 47.2%
3go9A02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.58 44.0 3.23e-01 82.7% 87.6%
3hx9B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 47.0 4.37e-01 90.7% 100.0%
4oj3B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 51.0 4.72e-01 100.0% 95.8%
1f08B00 3.40.1310.10 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.57 50.0 4.09e-01 100.0% 67.6%
2nrqA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.57 42.0 3.53e-01 80.0% 46.0%
2yweA04 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 42.0 3.69e-01 78.7% 66.7%
3b82A06 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 42.0 3.63e-01 78.7% 65.3%
3c1mA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.57 49.0 3.85e-01 97.3% 75.0%
2jz7A00 3.30.1660.30 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Selenium-binding protein 0.57 39.0 3.89e-01 77.3% 67.9%
1xdxA01 3.30.1140.40 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 0.57 39.0 3.60e-01 84.0% 54.0%
1apsA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 50.0 4.63e-01 100.0% 95.9%
3ce8A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 46.0 4.43e-01 92.0% 98.9%
5yppA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 47.0 4.51e-01 96.0% 100.0%
2wnyA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.56 40.0 3.36e-01 78.7% 42.3%
2qyxB01 3.30.70.1360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › mj0159-like 0.55 48.0 4.31e-01 98.7% 89.0%
2x3gA00 3.30.70.1910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 47.0 4.11e-01 96.0% 82.8%
3tviA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.55 47.0 3.74e-01 97.3% 73.6%
4g6tA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 38.0 3.31e-01 74.7% 75.8%
3trgA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 48.0 4.50e-01 100.0% 96.8%
2dbbA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.54 44.0 4.21e-01 93.3% 91.4%
3amiA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.53 47.0 3.50e-01 100.0% 57.8%
1vdhA01 3.30.70.1030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 0.53 40.0 3.50e-01 84.0% 81.8%
4evuB00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.52 36.0 3.70e-01 76.0% 79.4%
6ofsA04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.52 46.0 3.45e-01 100.0% 67.9%
1ej6A02 3.55.60.10 Alpha Beta › 3-Layer(bab) Sandwich › Reovirus components fold › Reovirus components 0.51 41.0 3.35e-01 89.3% 71.6%
1jw3A00 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.51 43.0 3.63e-01 100.0% 64.3%
1wjwA01 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.50 37.0 3.58e-01 80.0% 81.2%
ECOD (79)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4248896 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.76 47.0 5.01e-01 80.0% 72.3%
4965914 304.54.1.8 a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like › FLAD1_M 0.75 51.0 4.97e-01 74.7% 65.0%
3628325 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.75 49.0 5.26e-01 74.7% 78.5%
3667681 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.75 52.0 4.97e-01 80.0% 63.5%
4025594 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.74 49.0 5.12e-01 74.7% 74.3%
4003644 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.73 49.0 3.65e-01 74.7% 29.1%
3724442 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.73 51.0 5.24e-01 74.7% 77.1%
4344773 304.162.1.0 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.73 49.0 5.09e-01 74.7% 74.3%
4984314 304.43.1.6 a+b two layers › Alpha-beta plaits › Hypothetical protein TT1725 › Hypothetical protein TT1725 › FLAD1_M 0.73 51.0 4.82e-01 80.0% 61.1%
4352897 304.162.1.0 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.72 49.0 4.92e-01 74.7% 69.3%
5074728 304.162.1.0 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.72 50.0 4.93e-01 72.0% 71.2%
4934927 304.19.1.0 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain 0.72 52.0 4.97e-01 74.7% 67.1%
5073850 304.43.1.6 a+b two layers › Alpha-beta plaits › Hypothetical protein TT1725 › Hypothetical protein TT1725 › FLAD1_M 0.72 50.0 5.04e-01 74.7% 72.0%
3958644 256.1.1.2 a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › DUF5703 0.72 49.0 5.17e-01 74.7% 81.5%
5053080 304.162.1.0 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.72 49.0 4.81e-01 74.7% 65.1%
3318771 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.71 51.0 4.79e-01 74.7% 63.3%
4475311 304.162.1.0 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.71 51.0 4.90e-01 74.7% 70.6%
4416349 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.71 48.0 4.76e-01 74.7% 66.3%
4935371 327.11.2.87 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › FLAD1_M 0.71 50.0 5.18e-01 73.3% 78.6%
3672141 304.162.1.0 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.71 49.0 5.07e-01 74.7% 77.1%
4092153 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.71 50.0 4.75e-01 80.0% 62.2%
4496232 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.70 50.0 4.93e-01 74.7% 73.8%
3464409 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.70 47.0 4.72e-01 74.7% 69.3%
4992865 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.70 46.0 4.45e-01 74.7% 60.0%
4131480 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.69 50.0 4.89e-01 80.0% 70.0%
4153241 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.69 52.0 4.65e-01 80.0% 59.0%
3498546 304.162.1.2 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › FLAD1_M 0.69 48.0 4.82e-01 72.0% 73.3%
4440042 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.69 49.0 4.83e-01 74.7% 73.8%
5000612 304.19.1.0 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain 0.69 48.0 4.93e-01 72.0% 77.1%
4217144 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.68 49.0 4.80e-01 74.7% 73.8%
3487955 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.68 46.0 4.51e-01 72.0% 65.0%
4976949 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.68 45.0 4.34e-01 70.7% 60.0%
3287506 304.8.1.22 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › AHAS-like_ACT 0.68 46.0 4.32e-01 70.7% 56.8%
4029253 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.67 46.0 4.73e-01 72.0% 75.7%
4062392 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.66 52.0 4.68e-01 82.7% 81.0%
4978126 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.66 47.0 4.68e-01 74.7% 73.1%
3438053 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.66 45.0 4.59e-01 74.7% 72.0%
3519958 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.66 45.0 4.72e-01 72.0% 77.1%
3439107 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.66 43.0 4.40e-01 74.7% 68.0%
5046778 304.130.1.1 a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.66 53.0 4.82e-01 86.7% 83.0%
5009667 241.1.1.5 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › DUF2299 0.66 47.0 3.84e-01 74.7% 43.7%
4545114 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.66 47.0 4.61e-01 80.0% 70.0%
5022932 304.130.1.1 a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.66 54.0 5.17e-01 88.0% 100.0%
5021042 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.66 44.0 4.25e-01 74.7% 61.2%
4130731 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.65 49.0 3.85e-01 78.7% 70.7%
5023973 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.65 48.0 4.56e-01 78.7% 66.7%
5023983 304.130.1.1 a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.65 54.0 4.85e-01 88.0% 87.0%
3820702 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.65 45.0 4.58e-01 76.0% 73.3%
3958901 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.65 44.0 4.28e-01 70.7% 62.4%
3582958 864.1.1.2 a+b two layers › DLC › DLC › DLC › Tctex-1 0.65 46.0 3.94e-01 74.7% 49.2%
5039110 304.8.1.21 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.64 44.0 4.44e-01 74.7% 72.0%
4948615 304.8.1.21 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.64 43.0 3.50e-01 76.0% 35.3%
3642698 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.64 43.0 4.69e-01 76.0% 94.5%
3795151 304.8.1.71 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7636 0.63 44.0 4.01e-01 76.0% 54.0%
3818197 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 45.0 4.50e-01 74.7% 74.7%
4165721 304.8.1.21 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.63 43.0 4.42e-01 74.7% 75.7%
3365317 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 44.0 4.39e-01 76.0% 70.0%
4998201 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.63 43.0 4.22e-01 73.3% 68.2%
3445077 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 43.0 4.25e-01 74.7% 66.3%
3330441 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.62 44.0 4.42e-01 74.7% 76.0%
4067169 304.52.1.1 a+b two layers › Alpha-beta plaits › YbeD/HP0495-like › YbeD/HP0495-like › DUF493 0.62 43.0 4.20e-01 74.7% 64.7%
4977599 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.62 44.0 4.25e-01 74.7% 67.9%
167371 304.8.1.21 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.62 42.0 4.35e-01 76.0% 75.0%
3648422 304.8.1.21 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.62 42.0 3.53e-01 74.7% 40.8%
3803029 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.61 41.0 4.23e-01 76.0% 74.3%
4931923 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.61 49.0 4.87e-01 85.3% 98.8%
5056500 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.61 42.0 4.04e-01 76.0% 62.4%
4399086 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.61 48.0 4.62e-01 84.0% 92.9%
4959193 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.61 43.0 4.17e-01 74.7% 67.1%
5032609 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.61 43.0 4.36e-01 74.7% 76.0%
3488179 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.61 43.0 4.09e-01 74.7% 64.4%
3772559 304.159.1.3 a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in NisB › Alpha-beta plait domain in NisB › KH_Vigilin 0.61 50.0 4.14e-01 89.3% 80.8%
3445191 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.60 42.0 4.27e-01 74.7% 77.3%
3238562 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 43.0 4.01e-01 78.7% 59.0%
4943089 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.59 40.0 3.96e-01 74.7% 66.3%
3618884 304.6.1.1 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C 0.59 54.0 3.70e-01 100.0% 66.1%
3585079 304.24.1.1 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.58 48.0 3.52e-01 90.7% 50.2%
4979741 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.52 42.0 3.87e-01 89.3% 83.0%
2794455 3332.1.1.1 a+b two layers › ferredoxin-like domain in VP1 › ferredoxin-like domain in VP1 › ferredoxin-like domain in VP1 › Reovirus_L2_4th 0.50 42.0 3.67e-01 93.3% 84.2%
D3 medium residues 112-187_212-254
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lynB00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.66 42.0 4.15e-01 89.1% 60.5%
1rp3A01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.63 40.0 4.70e-01 74.8% 90.6%
7eq1R01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.60 45.0 3.40e-01 97.5% 32.9%
7d5qA01 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.60 47.0 4.02e-01 80.7% 62.6%
3cxbA03 1.10.1740.30 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain 0.60 37.0 4.41e-01 78.2% 91.4%
4l8iB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.58 38.0 3.91e-01 75.6% 69.6%
7dl9A01 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.56 43.0 3.65e-01 81.5% 62.4%
2p5tA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.55 36.0 4.07e-01 79.8% 85.9%
2eb1C00 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.54 46.0 4.06e-01 93.3% 63.9%
7m2wE01 1.20.120.1900 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Gamma-tubulin complex, C-terminal domain 0.54 41.0 2.98e-01 79.0% 68.1%
1t98A02 1.20.58.590 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chromosome partition protein MukF, middle domain 0.53 37.0 3.28e-01 70.6% 98.8%
4a64A02 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.53 31.0 3.22e-01 76.5% 59.8%
3rv0C02 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.53 41.0 3.84e-01 89.9% 68.1%
2qvwC06 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.52 38.0 3.57e-01 89.9% 60.1%
2hujA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.52 35.0 3.52e-01 73.1% 66.4%
3s84A02 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.52 39.0 3.58e-01 79.0% 79.6%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3962495 1079.1.1.0 alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA 0.66 55.0 5.10e-01 89.1% 92.7%
5005210 1075.1.1.3 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_2 0.63 45.0 3.36e-01 73.1% 51.4%
5026270 5050.1.1.1 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr 0.63 49.0 4.06e-01 81.5% 60.5%
3956922 1075.1.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane 0.62 44.0 3.48e-01 73.1% 48.6%
4021695 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.62 47.0 3.55e-01 80.7% 83.1%
4198249 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.62 47.0 4.07e-01 79.8% 63.3%
4982649 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.61 46.0 3.91e-01 79.0% 61.1%
3469810 1203.1.2.0 alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 0.61 43.0 3.99e-01 73.9% 90.3%
4993767 1075.1.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane 0.60 43.0 3.39e-01 73.9% 71.0%
5022909 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.58 44.0 3.85e-01 78.2% 61.7%
3284192 3563.1.1.1 alpha bundles › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › TatC 0.58 47.0 3.73e-01 87.4% 48.0%
3328397 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.58 44.0 4.41e-01 81.5% 96.0%
5008537 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.57 43.0 3.74e-01 81.5% 61.1%
3720723 5059.1.1.8 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Mg_trans_NIPA 0.56 48.0 4.22e-01 95.0% 85.6%
4946770 5050.1.1.21 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › FTR1 0.54 48.0 3.87e-01 100.0% 99.2%
4209908 7014.1.1.1 alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.54 41.0 4.02e-01 88.2% 71.1%
5009678 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.54 42.0 3.68e-01 81.5% 61.1%
4197249 7014.1.1.1 alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.54 42.0 4.06e-01 88.2% 71.9%
3630205 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.53 35.0 3.56e-01 73.9% 67.5%
4278712 5058.1.1.16 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 0.53 38.0 4.06e-01 77.3% 85.7%
4010186 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.51 40.0 3.42e-01 83.2% 60.5%
4510378 1037.1.1.1 alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT 0.51 44.0 3.52e-01 96.6% 62.0%
5068031 141.1.1.3 alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA 0.51 44.0 3.41e-01 96.6% 93.4%
4995143 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.50 41.0 3.47e-01 86.6% 89.7%
3968117 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.50 41.0 4.02e-01 90.8% 95.6%