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MN586047.1__QGJ95798.1__SEA_EMOORE_12__00012
Bact-VirMN586047.1__QGJ95798.1__SEA_EMOORE_12__00012
Identity
- Accession:
- MN586047 ↗
- Kingdom:
- phage
Quality
83.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Stackebrandtviridae›
Leonardvirus›
Gordonia_phage_EMoore
TaxID: 2656534
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 32-71
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2eixA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.58 | 43.0 | 3.50e-01 | 97.5% | 50.9% |
| 3bxpB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 47.0 | 2.94e-01 | 100.0% | 38.2% |
| 6mv2A02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 41.0 | 3.29e-01 | 92.5% | 61.9% |
| 1b35B00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 44.0 | 2.81e-01 | 100.0% | 51.0% |
| 1su1A00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.55 | 34.0 | 2.22e-01 | 77.5% | 10.9% |
| 3napB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 41.0 | 2.62e-01 | 92.5% | 34.8% |
| 1wv3A01 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.53 | 41.0 | 3.55e-01 | 97.5% | 77.6% |
| 4dnhA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 41.0 | 2.45e-01 | 100.0% | 97.6% |
| 2c60A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 39.0 | 3.38e-01 | 100.0% | 73.4% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3358972 | 1.1.7.120 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF7271 | 0.58 | 42.0 | 3.59e-01 | 82.5% | 61.3% |
| 4970510 | 56.2.1.1 ↗ | beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT | 0.57 | 35.0 | 3.02e-01 | 85.0% | 30.8% |
| 1211 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.55 | 44.0 | 2.81e-01 | 100.0% | 51.0% |
| 3667875 | 67.1.1.0 ↗ | beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain | 0.53 | 36.0 | 3.42e-01 | 82.5% | 54.5% |
| 3936885 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 42.0 | 3.68e-01 | 100.0% | 58.5% |
| 1158442 | 10.32.1.5 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Ephrin_lbd | 0.53 | 39.0 | 3.64e-01 | 85.0% | 68.5% |
| 2991657 | 7602.1.1.1 ↗ | a/b three-layered sandwiches › Lactate racemase C-terminal domain › Lactate racemase C-terminal domain › Lactate racemase C-terminal domain › LarA_C | 0.52 | 34.0 | 3.56e-01 | 100.0% | 82.8% |
| 2754129 | 11.1.1.343 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ScpA_C | 0.52 | 39.0 | 3.09e-01 | 100.0% | 35.9% |
| 4302391 | 4.1.1.398 ↗ | beta barrels › SH3 › SH3 › SH3 › YolD | 0.51 | 40.0 | 3.61e-01 | 97.5% | 70.8% |
| 4968925 | 375.1.1.356 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF29210 | 0.50 | 35.0 | 3.55e-01 | 97.5% | 82.5% |
| 4944045 | 4.17.1.2 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › Asparaginase | 0.50 | 38.0 | 3.33e-01 | 92.5% | 62.9% |