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MN592896.1__QGZ13134.1__X__00038

Bact-Vir

MN592896.1__QGZ13134.1__X__00038

Identity

Accession:
MN592896 ↗
Kingdom:
phage

Quality

72.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Alteromonas_phage_XX1924

TaxID: 2664192

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 38-102
PDB
Domain cluster: rep: MN877442.1__QHZ59776.1__X__00095__D64-123
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gn4A02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.65 52.0 4.33e-01 87.7% 84.3%
2zuoA08 2.30.30.620 Mainly Beta › Roll › SH3 type barrels. › 0.63 39.0 4.14e-01 73.8% 70.7%
1gmnA01 3.50.4.10 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor 0.62 46.0 4.22e-01 81.5% 97.7%
2hg6A00 3.90.1650.10 Alpha Beta › Alpha-Beta Complex › PA1123-like › PA1123-like 0.60 44.0 3.79e-01 78.5% 81.1%
6rxpA02 3.30.1600.10 Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' 0.60 35.0 3.11e-01 95.4% 41.1%
2i02A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 40.0 3.19e-01 75.4% 85.7%
2k2dA00 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.56 37.0 4.03e-01 75.4% 93.6%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 39.0 3.09e-01 76.9% 79.9%
1i8nA00 3.50.4.10 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor 0.55 44.0 4.05e-01 92.3% 88.8%
1t9mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 39.0 2.88e-01 78.5% 82.4%
2kl5A00 3.50.4.20 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Uncharacterised protein DUF1027 0.54 44.0 3.88e-01 96.9% 69.1%
1t3yA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.54 41.0 3.40e-01 86.2% 79.4%
5jzxD02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.52 40.0 3.00e-01 80.0% 61.6%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4613768 7533.1.1.1 ↗ a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.66 46.0 3.19e-01 73.8% 46.1%
3922996 198.1.1.4 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF3456 0.64 50.0 4.06e-01 86.2% 69.6%
5023733 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.61 45.0 2.96e-01 78.5% 40.0%
3997244 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.61 40.0 4.54e-01 76.9% 100.0%
3600630 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.60 38.0 3.68e-01 73.8% 56.0%
3236335 221.1.1.45 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Par3_HAL_N_term 0.60 33.0 3.07e-01 95.4% 45.0%
3932150 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.58 41.0 3.98e-01 75.4% 78.7%
4255735 101.1.9.98 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF4004 0.57 48.0 4.02e-01 100.0% 65.6%
3226096 390.1.1.1 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.57 43.0 4.03e-01 84.6% 94.1%
3936889 390.1.1.1 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.57 42.0 4.00e-01 81.5% 100.0%
3605967 3529.1.1.4 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault_4 0.55 39.0 3.75e-01 75.4% 77.3%
5027909 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 39.0 4.08e-01 78.5% 86.7%
1088178 1.1.5.9 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C 0.54 38.0 2.82e-01 76.9% 81.2%
3705025 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.54 42.0 3.44e-01 89.2% 80.0%
3238409 390.1.1.1 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.52 43.0 3.82e-01 98.5% 81.0%
3700662 355.1.1.0 ↗ few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like 0.51 36.0 3.36e-01 75.4% 78.8%
4335507 221.1.5.1 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Chemotaxis inhibitory protein CHIPS › CHIPS 0.51 33.0 2.90e-01 84.6% 41.0%
4072763 223.2.1.33 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.51 37.0 3.00e-01 92.3% 42.4%
3249589 904.1.1.1 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.50 35.0 2.59e-01 100.0% 25.8%
D2 medium residues 105-144
PDB
Domain cluster: representative
CATH (88)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.83 73.0 6.62e-01 100.0% 94.4%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.83 72.0 6.07e-01 100.0% 66.2%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 71.0 6.08e-01 100.0% 66.7%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 68.0 5.73e-01 100.0% 60.9%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 67.0 5.71e-01 100.0% 88.1%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.78 67.0 6.40e-01 100.0% 87.5%
1s1nA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 64.0 5.76e-01 100.0% 88.3%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 65.0 5.83e-01 100.0% 91.5%
2wg5F02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.77 61.0 5.43e-01 90.0% 96.6%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 64.0 5.68e-01 100.0% 80.6%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 65.0 5.69e-01 100.0% 69.8%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 66.0 5.51e-01 100.0% 70.0%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 63.0 5.60e-01 100.0% 75.8%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 63.0 5.18e-01 100.0% 69.2%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 62.0 5.40e-01 100.0% 95.5%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 61.0 5.21e-01 100.0% 77.1%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 61.0 4.87e-01 100.0% 64.0%
2wfwB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.74 59.0 5.05e-01 92.5% 89.6%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 60.0 5.45e-01 100.0% 91.7%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 61.0 5.87e-01 100.0% 87.2%
2rcnA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 61.0 5.33e-01 95.0% 93.4%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 60.0 4.95e-01 100.0% 66.3%
4js8A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.73 59.0 4.65e-01 95.0% 93.3%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 61.0 5.27e-01 100.0% 87.9%
4dapA01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.72 57.0 4.65e-01 92.5% 80.0%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 59.0 5.18e-01 100.0% 89.1%
3d0fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 56.0 4.65e-01 92.5% 95.9%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 55.0 5.22e-01 100.0% 81.1%
3bdlA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 55.0 3.69e-01 95.0% 63.3%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 53.0 5.02e-01 100.0% 78.2%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.67 55.0 4.60e-01 100.0% 66.2%
3ol0B00 6.20.90.30 Special › Other non-globular › SH3 type barrels. › 0.66 46.0 4.59e-01 72.5% 70.7%
3d31A03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.66 53.0 4.50e-01 95.0% 71.8%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 52.0 4.91e-01 100.0% 81.8%
2kcmA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 48.0 4.13e-01 87.5% 87.8%
2bwnB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.65 48.0 3.29e-01 85.0% 64.2%
1awjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 52.0 4.43e-01 100.0% 70.1%
2k5nA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 50.0 4.28e-01 92.5% 86.5%
1irxA02 2.30.30.300 Mainly Beta › Roll › SH3 type barrels. › class i lysyl-tRNA synthetase like 0.64 51.0 5.07e-01 95.0% 88.4%
5x68A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 50.0 2.93e-01 90.0% 33.7%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 52.0 4.75e-01 100.0% 77.6%
6rjiA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 46.0 4.34e-01 92.5% 63.5%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 49.0 4.18e-01 92.5% 57.5%
3h8lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 55.0 3.44e-01 100.0% 37.1%
3oyyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 47.0 4.22e-01 92.5% 92.3%
1eigA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 46.0 4.09e-01 95.0% 61.6%
3oyyB03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 47.0 4.30e-01 90.0% 98.3%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 46.0 4.18e-01 95.0% 67.2%
3j7aF02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.61 46.0 4.39e-01 87.5% 100.0%
4bpnW02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.61 46.0 4.33e-01 87.5% 100.0%
6az1E02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.61 46.0 4.32e-01 87.5% 100.0%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.60 45.0 3.90e-01 90.0% 52.1%
1q57G01 2.20.25.180 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.59 44.0 3.72e-01 85.0% 49.3%
5towB02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 44.0 3.04e-01 87.5% 38.7%
1hyuA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 48.0 3.23e-01 100.0% 57.7%
4k22B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 46.0 2.92e-01 97.5% 52.7%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 44.0 4.02e-01 95.0% 68.2%
8c0zE01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 46.0 3.39e-01 100.0% 95.4%
4bzyA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 45.0 3.37e-01 92.5% 61.1%
1aogA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 45.0 3.43e-01 100.0% 75.2%
2auwA01 3.30.2020.10 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › NE0471-like N-terminal domain 0.58 43.0 3.62e-01 90.0% 85.4%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.57 43.0 3.77e-01 90.0% 95.7%
4bjzA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 45.0 3.14e-01 100.0% 39.9%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 43.0 3.60e-01 95.0% 72.4%
3kbgA02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.57 41.0 3.99e-01 90.0% 67.9%
3ei3B02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 44.0 2.70e-01 95.0% 97.5%
2x8nA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.57 41.0 3.18e-01 80.0% 33.0%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.57 44.0 3.05e-01 92.5% 57.1%
4hb9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 43.0 2.61e-01 100.0% 37.6%
4fk1A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 46.0 3.06e-01 100.0% 54.5%
3ab1B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 43.0 2.86e-01 100.0% 50.5%
3dsoA00 2.40.10.300 Mainly Beta › Beta Barrel › Thrombin, subunit H › Copper resistance protein K 0.56 40.0 3.61e-01 100.0% 51.5%
3rp7A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 43.0 3.00e-01 97.5% 43.5%
2q0lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 44.0 2.98e-01 100.0% 55.1%
5twbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 45.0 2.90e-01 100.0% 48.0%
3i6dA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 43.0 3.10e-01 100.0% 46.5%
2dhjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 41.0 3.13e-01 97.5% 80.0%
6b4oA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 41.0 3.21e-01 100.0% 74.6%
2arpF02 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.54 38.0 3.22e-01 75.0% 76.4%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.54 36.0 3.15e-01 85.0% 38.9%
3jyyA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.54 41.0 3.04e-01 90.0% 26.9%
1twuA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 39.0 2.81e-01 85.0% 73.7%
1onfA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 39.0 3.08e-01 100.0% 94.1%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 38.0 3.36e-01 95.0% 49.3%
3e82E02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 39.0 2.62e-01 90.0% 72.0%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 40.0 3.18e-01 100.0% 54.6%
3luuA00 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.52 40.0 3.35e-01 100.0% 64.0%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.50 36.0 2.30e-01 82.5% 49.5%
ECOD (99)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3475240 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.86 75.0 6.69e-01 97.5% 85.5%
3200493 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.85 74.0 6.66e-01 97.5% 76.4%
4014906 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 72.0 5.68e-01 95.0% 51.2%
3936885 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 73.0 6.18e-01 97.5% 70.8%
3419491 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 75.0 6.50e-01 100.0% 81.7%
3256431 4.1.1.360 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 0.84 72.0 5.72e-01 97.5% 52.5%
3741680 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 73.0 6.60e-01 100.0% 85.5%
4003181 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.83 72.0 6.34e-01 100.0% 95.0%
3247995 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.83 73.0 6.06e-01 100.0% 64.3%
3502418 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 64.0 6.70e-01 90.0% 97.1%
4024913 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 71.0 6.03e-01 100.0% 60.0%
3609527 2006.1.1.4 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF 0.83 71.0 4.42e-01 97.5% 20.5%
3999508 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 71.0 5.94e-01 100.0% 81.4%
3475462 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.82 72.0 5.58e-01 100.0% 56.5%
3990390 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.82 61.0 6.41e-01 87.5% 94.3%
3600486 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 71.0 5.26e-01 100.0% 53.0%
4001172 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.81 69.0 5.81e-01 100.0% 78.6%
3930456 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 70.0 6.01e-01 100.0% 75.4%
3213114 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.81 69.0 5.37e-01 100.0% 68.9%
3706786 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 70.0 5.71e-01 100.0% 61.3%
3920026 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.81 70.0 4.40e-01 100.0% 20.5%
3496355 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 70.0 6.32e-01 100.0% 96.4%
3406663 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.80 64.0 6.00e-01 90.0% 100.0%
3776390 4.1.1.91 ↗ beta barrels › SH3 › SH3 › SH3 › hSH3 0.80 68.0 4.94e-01 100.0% 47.0%
3304602 4.1.1.427 ↗ beta barrels › SH3 › SH3 › SH3 › F-box 0.80 69.0 5.25e-01 100.0% 44.2%
3898952 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.80 69.0 5.64e-01 100.0% 72.0%
3485745 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.80 68.0 6.03e-01 100.0% 90.0%
3864347 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.80 67.0 5.86e-01 100.0% 92.3%
3907870 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.80 69.0 5.56e-01 100.0% 67.1%
3779830 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.80 70.0 5.35e-01 100.0% 56.7%
3702915 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.80 69.0 6.06e-01 100.0% 88.3%
3841524 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.80 67.0 4.95e-01 100.0% 49.1%
3498145 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.80 69.0 5.93e-01 100.0% 82.8%
3390253 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.80 68.0 5.60e-01 100.0% 73.3%
3621818 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.79 69.0 6.44e-01 100.0% 84.0%
3173941 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 67.0 5.08e-01 100.0% 45.0%
3406633 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.79 67.0 5.07e-01 100.0% 68.0%
3818428 4.1.1.66 ↗ beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.79 67.0 5.52e-01 100.0% 62.7%
3215500 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 66.0 5.97e-01 95.0% 85.5%
3619599 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.78 67.0 5.53e-01 100.0% 70.7%
3482676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 67.0 5.94e-01 100.0% 91.7%
3413864 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.78 67.0 4.43e-01 100.0% 35.2%
3626531 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.78 67.0 5.18e-01 100.0% 58.9%
1263713 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.78 67.0 6.20e-01 100.0% 82.7%
3579728 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.78 66.0 5.56e-01 100.0% 78.6%
3484007 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 65.0 5.56e-01 100.0% 77.1%
3211367 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.78 65.0 5.11e-01 100.0% 61.1%
3900733 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.78 65.0 5.54e-01 100.0% 77.1%
3873942 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 66.0 5.69e-01 100.0% 86.2%
3899589 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 65.0 5.79e-01 100.0% 91.7%
2427475 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 65.0 5.57e-01 100.0% 67.2%
3487936 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 65.0 5.48e-01 100.0% 75.7%
3995431 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.77 64.0 5.35e-01 100.0% 82.7%
4134876 4.1.1.334 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 0.77 65.0 4.30e-01 100.0% 32.1%
3554995 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.76 64.0 5.43e-01 100.0% 75.7%
4028871 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.76 61.0 5.08e-01 92.5% 83.6%
3924338 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.76 64.0 5.40e-01 100.0% 75.7%
3918340 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.75 63.0 5.38e-01 100.0% 78.6%
3447770 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.74 56.0 5.88e-01 85.0% 100.0%
5049906 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.74 61.0 5.42e-01 95.0% 63.3%
157818 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 61.0 4.83e-01 100.0% 60.4%
3246255 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 61.0 5.24e-01 100.0% 75.7%
3367301 2.1.1.48 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Elong-fact-P_C 0.74 55.0 5.07e-01 92.5% 61.1%
3660755 4.8.1.21 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PTM_DIR17_Tudor 0.73 61.0 5.10e-01 100.0% 62.7%
3300051 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.72 61.0 5.10e-01 100.0% 61.3%
3660244 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.72 60.0 5.03e-01 100.0% 62.7%
3194005 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.72 61.0 5.06e-01 100.0% 78.7%
3517131 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.72 57.0 5.78e-01 95.0% 100.0%
4018258 2.1.1.230 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF26639 0.71 56.0 4.83e-01 90.0% 56.9%
3441677 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 60.0 5.59e-01 97.5% 94.0%
3301383 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.70 57.0 5.38e-01 97.5% 86.0%
3810217 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 55.0 5.30e-01 97.5% 86.0%
4237317 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.69 54.0 4.75e-01 87.5% 93.3%
3194818 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 57.0 4.88e-01 100.0% 77.1%
4940157 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.68 56.0 5.16e-01 100.0% 87.3%
3805766 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.67 57.0 5.22e-01 100.0% 90.9%
3168104 5.1.5.52 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › EMC1_C 0.64 50.0 2.78e-01 92.5% 17.3%
3641913 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.62 49.0 4.11e-01 92.5% 70.7%
224080 2.14.1.2 ↗ beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like › CHS5_N 0.62 49.0 4.10e-01 92.5% 55.3%
3520270 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.62 48.0 3.66e-01 87.5% 35.2%
5037599 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.62 47.0 2.90e-01 92.5% 27.6%
4113537 2.1.1.327 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF27401 0.61 48.0 4.23e-01 92.5% 95.4%
3991453 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 46.0 2.91e-01 87.5% 25.6%
3645592 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.59 47.0 3.72e-01 100.0% 83.0%
4623924 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.59 42.0 3.95e-01 92.5% 60.0%
4043931 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.58 44.0 4.03e-01 90.0% 60.0%
5035446 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.58 44.0 4.07e-01 90.0% 98.2%
4976969 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.58 44.0 3.78e-01 92.5% 96.0%
4440203 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.58 42.0 3.83e-01 90.0% 56.7%
4016568 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.57 47.0 2.70e-01 100.0% 41.3%
3728847 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.57 45.0 2.62e-01 100.0% 35.5%
3184377 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.57 44.0 2.58e-01 100.0% 53.5%
2552766 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.57 44.0 3.13e-01 100.0% 86.5%
4945660 230.1.1.3 ↗ a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.57 44.0 3.10e-01 95.0% 62.7%
3219127 2003.1.2.130 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like, Pyr_redox_2, NAD_binding_8 0.57 44.0 2.56e-01 100.0% 27.2%
3701845 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 41.0 3.64e-01 92.5% 84.3%
3176132 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.55 42.0 2.52e-01 100.0% 78.5%
4026595 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.54 42.0 3.45e-01 97.5% 86.4%
4176722 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.52 39.0 3.21e-01 100.0% 69.0%
D3 medium residues 148-180
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rm6B02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.70 51.0 3.85e-01 97.0% 71.0%
4ceiA05 1.10.486.10 Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 0.63 48.0 3.16e-01 90.9% 22.2%
2ekfA01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.59 42.0 4.01e-01 87.9% 65.2%
2di0A01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.59 45.0 4.25e-01 93.9% 67.4%
6psyA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.54 40.0 2.50e-01 87.9% 63.9%
1fexA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.53 38.0 3.51e-01 97.0% 54.2%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4616072 103.1.1.83 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › DUF2603 0.73 54.0 4.47e-01 93.9% 42.9%
4993064 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.72 57.0 3.72e-01 100.0% 33.7%
4019283 2004.1.1.880 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C, DEXQc_Suv3 0.64 50.0 2.86e-01 100.0% 90.2%