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MN602881.1__QGF22027.1__X__00070

Bact-Vir

MN602881.1__QGF22027.1__X__00070

Identity

Accession:
MN602881 ↗
Kingdom:
phage

Quality

91.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-99
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zbtA02 3.30.70.1660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.71 46.0 3.81e-01 91.4% 38.0%
5wt3A03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.71 49.0 3.93e-01 98.9% 37.0%
4xrpC01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.68 55.0 4.44e-01 98.9% 46.3%
1sqhA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.65 43.0 3.54e-01 100.0% 37.3%
3tupA02 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.65 41.0 4.12e-01 84.9% 62.5%
3d6wB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 41.0 4.57e-01 97.8% 84.3%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 38.0 3.69e-01 71.0% 53.4%
3gkuA01 3.30.30.80 Alpha Beta › 2-Layer Sandwich › Defensin A-like › probable RNA-binding protein from clostridium symbiosum atcc 14940 0.63 36.0 4.41e-01 81.7% 98.1%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 39.0 3.73e-01 71.0% 53.2%
2qswA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 36.0 3.72e-01 83.9% 60.0%
2ix2A01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.60 37.0 2.79e-01 97.8% 25.8%
2l8yA00 3.30.110.70 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B 0.60 41.0 3.95e-01 86.0% 61.9%
2yqzA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 47.0 3.72e-01 100.0% 41.5%
2fn0B00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.59 47.0 3.12e-01 88.2% 33.5%
1cg2A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 43.0 4.15e-01 84.9% 67.3%
2dhjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 36.0 3.30e-01 73.1% 45.6%
8c46A01 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 45.0 4.21e-01 84.9% 67.5%
3bs1A00 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.58 37.0 3.65e-01 98.9% 58.3%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 40.0 4.13e-01 73.1% 97.8%
5xoyB02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 44.0 4.27e-01 84.9% 72.0%
1ajoA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 51.0 3.91e-01 98.9% 77.4%
4pxdA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 43.0 4.06e-01 84.9% 66.1%
3d2uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 37.0 3.81e-01 94.6% 69.6%
4qclA02 3.30.70.2820 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 42.0 3.99e-01 82.8% 66.7%
2b25A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 44.0 3.58e-01 100.0% 44.5%
4xmqA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 45.0 3.96e-01 86.0% 66.9%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 37.0 3.74e-01 72.0% 68.8%
4ewtA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 42.0 3.96e-01 84.9% 67.8%
2yyzA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 31.0 3.70e-01 71.0% 87.9%
7qu9A01 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.54 45.0 2.99e-01 96.8% 47.6%
1egxA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 37.0 3.46e-01 71.0% 59.1%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 37.0 3.52e-01 72.0% 58.8%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 37.0 3.56e-01 72.0% 68.8%
5heeA00 3.40.830.10 Alpha Beta › 3-Layer(aba) Sandwich › Protocatechuate 4,5-dioxygenase; Chain B › LigB-like 0.53 46.0 3.44e-01 100.0% 44.3%
1r9fA01 3.30.390.180 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 0.53 37.0 3.50e-01 71.0% 82.6%
2dn6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 37.0 3.51e-01 73.1% 69.6%
1mkmA03 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.52 39.0 3.30e-01 81.7% 74.4%
5teqA01 3.30.470.110 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › 0.52 40.0 3.15e-01 84.9% 36.9%
1l3lA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.52 43.0 3.54e-01 90.3% 64.1%
1p9rA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 45.0 4.30e-01 100.0% 100.0%
2kcwA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 43.0 3.70e-01 100.0% 57.8%
4gzuA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 37.0 3.18e-01 75.3% 54.7%
3eeeA00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.51 45.0 3.65e-01 100.0% 51.6%
2y3uA02 3.30.980.50 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › 0.51 44.0 4.13e-01 94.6% 83.2%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 39.0 2.90e-01 81.7% 46.6%
3kwrA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 38.0 3.96e-01 80.6% 88.0%
1ki1B02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 35.0 3.05e-01 72.0% 54.9%
2gkpA00 3.40.1590.10 Alpha Beta › 3-Layer(aba) Sandwich › NMB0488-like fold › NMB0488-like 0.50 41.0 3.44e-01 89.2% 71.8%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3307519 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.73 52.0 5.87e-01 87.1% 98.6%
3743131 2003.1.5.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 0.72 54.0 3.64e-01 98.9% 21.9%
3699932 2003.1.5.51 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TPMT 0.71 58.0 4.17e-01 100.0% 31.8%
5028098 2003.1.5.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 0.67 50.0 3.54e-01 97.8% 25.6%
3987344 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.66 51.0 4.65e-01 100.0% 61.6%
3706686 4263.2.1.0 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.64 39.0 4.51e-01 72.0% 86.2%
4017595 306.10.1.6 a+b two layers › Glucose permease domain IIB-like › H1 domain of KCTD12 › H1 domain of KCTD12 › PF28980 0.64 50.0 4.57e-01 84.9% 98.4%
4992470 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.63 39.0 4.66e-01 74.2% 96.7%
3264278 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 39.0 3.52e-01 72.0% 44.6%
143428 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.62 38.0 3.49e-01 97.8% 47.5%
3592500 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.62 56.0 4.32e-01 100.0% 47.8%
3587889 2003.1.5.79 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 0.62 49.0 3.87e-01 100.0% 40.5%
3267918 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 35.0 4.39e-01 98.9% 96.4%
3388895 220.1.1.170 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin 0.61 39.0 3.71e-01 72.0% 55.5%
3620293 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 48.0 4.32e-01 100.0% 61.5%
3474420 220.1.1.123 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.60 36.0 3.10e-01 72.0% 36.7%
3363746 2003.1.5.165 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11, Methyltransf_23 0.60 53.0 3.88e-01 100.0% 41.5%
3516025 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 42.0 4.02e-01 72.0% 75.2%
4383522 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.59 51.0 3.37e-01 97.8% 25.1%
3539435 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.59 53.0 3.68e-01 100.0% 33.9%
3887525 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.59 53.0 3.63e-01 100.0% 40.6%
5023975 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.59 48.0 4.33e-01 100.0% 65.6%
4464568 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.59 42.0 4.10e-01 100.0% 69.0%
3625596 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 38.0 4.10e-01 72.0% 77.5%
3940847 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.58 40.0 3.80e-01 72.0% 60.0%
3861121 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 40.0 3.78e-01 72.0% 60.9%
5051036 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.58 51.0 4.06e-01 100.0% 77.9%
4978111 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.58 43.0 3.75e-01 98.9% 51.0%
3548074 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 40.0 3.65e-01 72.0% 64.2%
3934937 873.1.1.5 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB 0.57 52.0 4.07e-01 100.0% 55.3%
3921879 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 39.0 3.28e-01 72.0% 42.5%
3621726 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 39.0 3.60e-01 72.0% 55.2%
3540167 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 40.0 3.50e-01 72.0% 70.4%
4417259 2012.1.1.2 a/b three-layered sandwiches › LigB-like › LigB-like › LigB-like › LigB 0.56 45.0 3.22e-01 89.2% 100.0%
3244890 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 39.0 3.60e-01 72.0% 60.8%
3339984 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 39.0 3.60e-01 72.0% 62.5%
3273591 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 39.0 3.48e-01 72.0% 52.3%
3992564 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 39.0 3.40e-01 72.0% 53.6%
4842242 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.56 48.0 3.33e-01 97.8% 30.7%
4488509 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.56 39.0 3.30e-01 72.0% 50.0%
4001872 220.1.1.123 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.56 39.0 3.06e-01 72.0% 38.4%
3471888 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 49.0 3.39e-01 100.0% 64.9%
3584209 206.1.1.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr,TGF_beta_GS 0.56 49.0 3.33e-01 98.9% 58.6%
3989004 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.56 48.0 3.40e-01 97.8% 32.6%
3512448 220.1.1.37 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_13 0.56 38.0 3.23e-01 72.0% 56.2%
3481296 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 39.0 3.47e-01 72.0% 58.5%
3931929 873.1.1.5 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB 0.55 50.0 3.83e-01 100.0% 49.5%
4202176 220.1.1.123 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.55 41.0 3.21e-01 78.5% 51.6%
3567815 220.1.1.37 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_13 0.55 38.0 3.15e-01 72.0% 53.9%
3778852 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.55 38.0 3.32e-01 72.0% 53.6%
3495264 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 38.0 3.06e-01 72.0% 39.4%
3906768 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 38.0 3.44e-01 72.0% 60.0%
4945570 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.54 46.0 3.95e-01 100.0% 58.0%
3250819 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.54 38.0 3.27e-01 72.0% 57.9%
3620856 873.1.1.5 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB 0.54 49.0 3.79e-01 100.0% 52.0%
4437554 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.54 39.0 3.63e-01 78.5% 85.6%
3760913 873.1.1.5 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB 0.54 48.0 4.39e-01 100.0% 81.6%
3545477 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 37.0 3.32e-01 73.1% 60.0%
3992596 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 47.0 3.73e-01 100.0% 59.5%
3537229 310.3.1.21 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › HNOB 0.53 48.0 4.63e-01 100.0% 97.1%
3883832 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 39.0 3.27e-01 77.4% 51.2%
4366164 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.52 47.0 3.04e-01 100.0% 25.2%
3906424 220.1.1.49 beta barrels › PH domain-like › PH domain-like › PH domain-like › Carm_PH 0.52 40.0 3.58e-01 86.0% 64.3%
3988949 4070.1.1.2 alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 0.52 37.0 3.02e-01 75.3% 82.2%
3605401 4263.2.1.0 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.51 42.0 4.34e-01 92.5% 94.4%
4419362 11.1.1.96 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.51 37.0 3.55e-01 76.3% 94.5%
5022358 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.51 43.0 4.09e-01 100.0% 77.4%
3251045 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.51 37.0 3.26e-01 79.6% 73.4%
3570221 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.50 36.0 3.25e-01 100.0% 53.3%