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MN604230.1__QGF21712.1__Sam112_gp5__00005

Bact-Vir

MN604230.1__QGF21712.1__Sam112_gp5__00005

Identity

Accession:
MN604230 ↗
Kingdom:
phage

Quality

82.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Trautnerviridae› Prospektnaukivirus› Bacillus_phage_vB_BcM_Sam112

TaxID: 2663324

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-43_57-78
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2olvB02 1.10.3810.10 Mainly Alpha › Orthogonal Bundle › Penicillin binding protein transpeptidase fold › Biosynthetic peptidoglycan transglycosylase-like 0.67 53.0 3.74e-01 84.6% 90.5%
3h0dB02 1.10.1200.150 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain 0.67 47.0 4.37e-01 73.8% 70.4%
1yozA00 1.10.3200.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like 0.65 50.0 4.19e-01 83.1% 77.9%
3iylU02 1.10.287.1520 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 44.0 4.78e-01 75.4% 100.0%
2gxaE01 1.10.10.510 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain 0.55 38.0 3.78e-01 76.9% 89.0%
1vfrA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.54 40.0 2.84e-01 80.0% 44.7%
6n2nA01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.54 36.0 2.73e-01 70.8% 90.4%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4447311 310.2.1.1 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.72 55.0 3.89e-01 80.0% 96.7%
4473504 304.136.1.3 ↗ a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain › SGIII 0.69 47.0 4.25e-01 70.8% 72.2%
3598779 182.1.1.0 ↗ alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain 0.66 48.0 3.04e-01 75.4% 55.9%
D2 medium residues 79-177
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14265.12 best DUF4355 28.9 1.50e-06 100.0% 78.2%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nnwA02 1.10.287.4070 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 45.0 4.13e-01 70.7% 67.7%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4999428 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.79 58.0 5.21e-01 76.8% 98.5%
3400767 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.70 64.0 4.44e-01 100.0% 86.0%
3275441 3722.1.1.1 ↗ alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 0.66 53.0 3.70e-01 86.9% 54.5%
3924238 3722.1.1.0 ↗ alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain 0.65 55.0 4.13e-01 90.9% 73.2%