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MN604698.1__QIQ61269.1__Sam46_gp68__00068

Bact-Vir

MN604698.1__QIQ61269.1__Sam46_gp68__00068

Identity

Accession:
MN604698 ↗
Kingdom:
phage

Quality

76.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Samaravirus› Bacillus_phage_vB_BcM_Sam46

TaxID: 2719179

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 22-75
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26372.1 best DUF8096 28.6 1.30e-06 70.4% 75.0%
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jo6A00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.77 60.0 4.74e-01 85.2% 57.3%
4kt3B00 3.10.450.170 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › type vi secretion system effector-immunity co pseudomonas protegens 0.77 52.0 3.90e-01 70.4% 46.1%
3gkeA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.75 54.0 4.07e-01 83.3% 32.3%
3d89A00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.71 60.0 4.40e-01 92.6% 81.6%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 49.0 4.16e-01 75.9% 98.9%
3v7dD02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.67 52.0 3.24e-01 88.9% 23.1%
1shyB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.67 53.0 3.14e-01 90.7% 24.0%
4a2lF02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 52.0 3.27e-01 90.7% 21.3%
2cmzA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.64 45.0 3.85e-01 75.9% 80.6%
3c7xA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.63 51.0 3.49e-01 90.7% 26.0%
7apkF01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 46.0 2.91e-01 85.2% 16.2%
1t3bA01 3.10.450.70 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Disulphide bond isomerase, DsbC/G, N-terminal 0.62 44.0 4.61e-01 79.6% 95.8%
1upsA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.62 47.0 3.50e-01 81.5% 45.1%
2ghsA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.61 49.0 3.15e-01 92.6% 24.4%
3ottA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 45.0 2.90e-01 85.2% 17.1%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 41.0 4.28e-01 70.4% 93.6%
6fucA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 44.0 3.82e-01 79.6% 90.7%
4a2lB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 47.0 3.01e-01 90.7% 29.1%
4gp3A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.59 43.0 3.38e-01 79.6% 45.1%
1f49A05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.59 44.0 2.89e-01 87.0% 40.0%
3v9fA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 47.0 3.00e-01 94.4% 17.4%
2jneA00 2.10.290.10 Mainly Beta › Ribbon › Rubredoxin-like › YfgJ-like 0.58 38.0 3.59e-01 72.2% 50.7%
4h0aA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.58 46.0 2.98e-01 94.4% 19.5%
2ecfA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.57 44.0 2.65e-01 88.9% 14.3%
2rowA01 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.57 42.0 3.90e-01 81.5% 87.3%
3v9fA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 42.0 2.74e-01 87.0% 18.3%
3rlfF02 3.10.650.10 Alpha Beta › Roll › MalF N-terminal region-like › MalF N-terminal region-like 0.56 41.0 3.58e-01 77.8% 58.5%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 41.0 3.33e-01 79.6% 57.8%
4ba0A01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.54 39.0 2.82e-01 83.3% 34.2%
1a7tA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.54 42.0 2.87e-01 90.7% 92.1%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.53 40.0 2.95e-01 87.0% 62.0%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 36.0 3.51e-01 87.0% 59.4%
5x7qA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.53 42.0 2.91e-01 96.3% 56.6%
5f7uA02 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.53 40.0 2.77e-01 88.9% 85.4%
2fmlA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 41.0 3.12e-01 94.4% 87.8%
6grrB01 3.30.457.10 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain 0.52 41.0 3.73e-01 92.6% 100.0%
1x9zA01 3.30.1540.20 Alpha Beta › 2-Layer Sandwich › formyl-coa transferase, domain 3 › MutL, C-terminal domain, dimerisation subdomain 0.52 38.0 3.30e-01 83.3% 89.2%
3moiA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 36.0 2.65e-01 87.0% 91.3%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1171970 4294.1.1.10 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Rieske_4 0.82 57.0 5.62e-01 74.1% 72.4%
3208301 66.1.1.3 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Sol_Rieske_ferrdox 0.80 63.0 4.78e-01 85.2% 65.0%
3910652 66.1.1.3 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Sol_Rieske_ferrdox 0.79 62.0 4.89e-01 85.2% 55.5%
4369866 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.79 54.0 6.12e-01 72.2% 97.5%
4964214 375.8.1.1 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.77 52.0 5.20e-01 70.4% 69.1%
3609816 66.1.1.3 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Sol_Rieske_ferrdox 0.77 59.0 4.29e-01 83.3% 55.2%
5057035 101.1.9.151 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Zn_ribbon_TFIIB 0.74 55.0 4.64e-01 79.6% 97.8%
3877833 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.72 48.0 4.16e-01 70.4% 46.3%
5061079 4294.1.1.13 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Zn_ribbon_TFIIB 0.70 47.0 5.00e-01 74.1% 82.2%
3453009 4357.1.1.6 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 0.70 48.0 4.13e-01 72.2% 100.0%
3892544 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.66 51.0 3.22e-01 87.0% 18.4%
3225979 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.66 53.0 3.23e-01 90.7% 18.4%
5051552 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.65 44.0 3.68e-01 70.4% 72.0%
3169693 5.1.4.80 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Utp8_b_propeller 0.65 52.0 3.18e-01 88.9% 19.4%
3621078 5.1.4.164 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 0.65 51.0 3.13e-01 88.9% 17.4%
5051764 622.4.1.0 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.65 47.0 3.39e-01 75.9% 67.7%
None — 0.65 50.0 3.13e-01 90.7% 25.1%
3233389 5.1.4.139 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 0.64 52.0 3.16e-01 90.7% 17.4%
3529118 5.1.4.111 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › HPS6 0.63 49.0 3.01e-01 88.9% 16.6%
3702882 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 50.0 3.05e-01 90.7% 16.1%
3855202 5.1.4.21 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 0.63 49.0 2.95e-01 87.0% 18.2%
3457638 4357.1.1.6 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 0.63 46.0 3.90e-01 77.8% 97.8%
4484797 5.1.4.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.63 50.0 3.04e-01 90.7% 15.8%
3920678 5.1.5.41 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_2 0.63 51.0 3.10e-01 90.7% 22.3%
3597435 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 50.0 3.04e-01 90.7% 22.1%
4029138 5.1.4.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Coatomer_WDAD 0.62 50.0 3.12e-01 90.7% 19.4%
3905352 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 50.0 2.92e-01 92.6% 18.9%
3487861 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 47.0 2.86e-01 87.0% 22.1%
3481824 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.62 46.0 3.92e-01 81.5% 54.4%
3743467 5.1.4.332 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29748 0.62 48.0 3.01e-01 90.7% 27.1%
5054848 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.61 48.0 4.03e-01 90.7% 63.0%
None — 0.61 49.0 2.98e-01 90.7% 22.2%
3520661 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 49.0 2.84e-01 90.7% 11.5%
3460976 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.61 49.0 3.00e-01 88.9% 14.9%
4267033 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.60 49.0 3.06e-01 92.6% 27.1%
3614189 5.1.4.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Coatomer_WDAD 0.60 46.0 3.05e-01 90.7% 21.9%
5035278 5.1.5.235 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta_propel 0.59 47.0 3.24e-01 92.6% 35.3%
1221505 12.3.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.59 45.0 2.94e-01 88.9% 37.2%
3542023 5.1.4.139 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 0.59 47.0 2.91e-01 92.6% 16.6%
3393233 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 46.0 3.00e-01 90.7% 23.2%
4079675 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.59 42.0 3.48e-01 79.6% 42.2%
3815146 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.59 44.0 2.83e-01 85.2% 20.4%
3738388 5.1.4.179 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_Vps41 0.59 45.0 2.84e-01 88.9% 27.6%
3807893 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.59 47.0 2.99e-01 94.4% 16.6%
3389498 5.1.4.179 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_Vps41 0.58 46.0 2.87e-01 90.7% 17.7%
3934570 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 49.0 3.02e-01 100.0% 33.1%
3331611 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 44.0 3.16e-01 88.9% 44.9%
5009522 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 43.0 2.68e-01 87.0% 13.1%
3465140 5.1.3.54 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1668 0.57 44.0 2.73e-01 88.9% 18.9%
3786743 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.57 42.0 2.81e-01 85.2% 20.0%
3928729 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.57 43.0 3.01e-01 88.9% 29.2%
3992641 331.4.1.9 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.57 43.0 4.03e-01 85.2% 65.7%
3743437 3257.1.1.1 ↗ a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.56 48.0 3.38e-01 100.0% 77.4%
3777275 5.1.4.139 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 0.56 45.0 2.78e-01 100.0% 32.4%
3619889 331.23.1.7 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF73-100_C 0.55 42.0 3.93e-01 85.2% 68.6%
5019922 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 41.0 2.63e-01 85.2% 20.0%
4849322 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.55 43.0 3.18e-01 94.4% 38.0%
3802164 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.54 40.0 2.61e-01 87.0% 26.5%
3921144 5.1.4.179 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_Vps41 0.54 40.0 2.58e-01 90.7% 13.8%
5004274 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.54 40.0 3.67e-01 83.3% 70.7%
3600254 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.53 36.0 2.63e-01 74.1% 27.0%
3823899 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.53 44.0 2.94e-01 98.1% 38.0%
3228248 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 38.0 2.53e-01 83.3% 23.9%
3803835 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.51 37.0 2.41e-01 81.5% 17.1%