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MN615700.1__QGJ86915.1__SMS12_073__00073

Bact-Vir

MN615700.1__QGJ86915.1__SMS12_073__00073

Identity

Accession:
MN615700 ↗
Kingdom:
phage

Quality

85.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lindbergviridae› Pbunavirus› Pseudomonas_phage_vB_PaeM_SMS12

TaxID: 2664210

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-128
PDB
Domain cluster: rep: MN234206.1__QFG12290.1__PBI_RACECAR_277__00246__D97-238
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF16793.11 best RepB_primase 134.8 4.70e-39 100.0% 59.7%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h20A02 3.30.70.1790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RepB DNA-primase, N-terminal domain 0.84 63.0 6.96e-01 96.1% 95.1%
3jtnB00 3.30.70.1950 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 39.0 4.46e-01 91.3% 88.9%
1hkyA00 3.50.4.10 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor 0.57 28.0 3.29e-01 89.8% 65.1%
3lubA01 3.40.50.10310 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Creatininase 0.50 36.0 2.96e-01 74.0% 98.3%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
185296 862.1.1.4 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › RepB_primase 0.82 65.0 5.49e-01 98.4% 52.8%
2721360 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.80 65.0 5.61e-01 100.0% 57.8%
4274062 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.67 57.0 4.46e-01 89.0% 49.2%
4426711 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.67 57.0 4.41e-01 89.0% 47.1%
5004945 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.66 56.0 4.34e-01 88.2% 45.9%
7174 862.1.1.3 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol 0.64 55.0 4.63e-01 100.0% 56.2%
5065288 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.63 52.0 4.02e-01 88.2% 46.2%
4126255 4967.1.1.25 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2+MatK_N 0.56 40.0 3.11e-01 74.0% 70.9%
D2 high residues 144-254
PDB
Domain cluster: rep: MN592897.1__QGT52237.1__X__00012__D230-312