←Back to structures

MN655999.1__QHB48920.1__X__00048

Bact-Vir

MN655999.1__QHB48920.1__X__00048

Identity

Accession:
MN655999 ↗
Kingdom:
phage

Quality

84.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Andersonviridae› Felixounavirus› Shigella_phage_Z31

TaxID: 2675202

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-59
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.74 52.0 4.78e-01 74.1% 65.3%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.73 54.0 4.16e-01 79.3% 68.3%
3o2zP00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 50.0 3.98e-01 77.6% 68.1%
2h1eA02 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 48.0 4.98e-01 82.8% 92.7%
6pxcA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.63 49.0 4.11e-01 86.2% 69.2%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 43.0 4.26e-01 75.9% 67.7%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 42.0 3.93e-01 74.1% 58.3%
4bwkB01 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.61 44.0 2.91e-01 79.3% 54.0%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 46.0 4.31e-01 79.3% 66.7%
6guuA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 43.0 4.42e-01 82.8% 81.5%
1st8A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 40.0 2.52e-01 70.7% 27.3%
3ijfX00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.59 46.0 3.70e-01 87.9% 90.2%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 42.0 4.07e-01 77.6% 66.7%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 49.0 4.03e-01 96.6% 69.4%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.56 41.0 3.00e-01 82.8% 79.6%
3fetA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.55 38.0 2.84e-01 86.2% 25.5%
6innA04 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.55 43.0 3.32e-01 86.2% 49.6%
7qzqA01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.54 43.0 2.75e-01 93.1% 82.6%
2crfA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 40.0 3.26e-01 87.9% 69.6%
5fbhA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 39.0 2.87e-01 86.2% 32.6%
2rsmA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 37.0 3.00e-01 75.9% 43.5%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.52 41.0 3.23e-01 94.8% 93.8%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 36.0 3.17e-01 82.8% 50.6%
4nnaA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 43.0 2.75e-01 98.3% 98.5%
6bjqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.39e-01 82.8% 89.8%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.50 35.0 2.47e-01 74.1% 24.1%
5os9A00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.50 40.0 3.15e-01 86.2% 82.6%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5032461 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 51.0 4.94e-01 81.0% 64.6%
5001168 2.1.1.1 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.73 53.0 4.42e-01 77.6% 80.0%
3904071 214.1.1.11 ↗ a+b two layers › SH2 › SH2 › SH2 › PF27628 0.69 54.0 4.28e-01 86.2% 53.3%
3441142 4.8.1.7 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › SAWADEE 0.67 46.0 4.71e-01 75.9% 76.4%
4965392 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.65 47.0 5.06e-01 82.8% 90.0%
3389626 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.64 46.0 4.23e-01 77.6% 58.7%
3212945 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.63 50.0 5.06e-01 87.9% 88.1%
3739848 7580.1.1.1 ↗ a/b three-layered sandwiches › RibA-like › RibA-like › RibA-like › GTP_cyclohydro2 0.62 44.0 3.19e-01 75.9% 79.4%
3555043 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.62 47.0 4.39e-01 86.2% 65.3%
3604095 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.61 45.0 3.74e-01 79.3% 75.2%
3230022 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 49.0 4.65e-01 87.9% 92.9%
3530891 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 52.0 4.28e-01 96.6% 56.0%
3622024 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.61 45.0 4.47e-01 84.5% 76.7%
4397221 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.61 45.0 4.38e-01 84.5% 70.8%
4024862 708.1.2.11 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › STEEP1 0.60 40.0 3.31e-01 70.7% 39.1%
3310899 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.60 46.0 4.13e-01 86.2% 60.0%
3320473 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.59 53.0 3.27e-01 100.0% 45.1%
3994778 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 41.0 3.21e-01 75.9% 36.0%
4022963 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 48.0 2.92e-01 98.3% 96.6%
1489341 330.10.1.1 ↗ a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO 0.58 43.0 3.35e-01 81.0% 76.1%
3518991 284.1.3.4 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.57 42.0 3.97e-01 82.8% 88.0%
3520079 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 38.0 3.11e-01 75.9% 36.5%
3340517 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.56 44.0 2.82e-01 89.7% 80.3%
3466584 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 44.0 4.26e-01 89.7% 87.7%
3269772 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.55 44.0 2.67e-01 91.4% 81.8%
2512616 330.10.1.0 ↗ a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain 0.54 39.0 3.29e-01 81.0% 77.9%
4028452 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 41.0 3.36e-01 100.0% 62.2%
3321190 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 41.0 2.66e-01 96.6% 85.5%
3578128 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 35.0 3.58e-01 74.1% 78.2%
None — 0.51 43.0 2.68e-01 98.3% 86.5%