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MN689504.1__QGT52411.1__5205F_000065__00028
Bact-VirMN689504.1__QGT52411.1__5205F_000065__00028
Identity
- Accession:
- MN689504 ↗
- Kingdom:
- phage
Quality
62.2
mean pLDDT
Taxonomy
TaxID: 2675236
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-113
D2
medium
residues 173-253
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zymA02 | 1.10.274.10 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain | 0.69 | 51.0 | 4.45e-01 | 79.0% | 66.7% |
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.64 | 53.0 | 5.28e-01 | 93.8% | 100.0% |
| 1fntc01 | 1.20.120.180 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Proteasome activator pa28, C-terminal domain | 0.55 | 38.0 | 2.98e-01 | 71.6% | 64.9% |
| 6h5hA00 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.54 | 37.0 | 3.90e-01 | 71.6% | 84.5% |
| 2gfhA02 | 1.20.120.710 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain | 0.53 | 39.0 | 3.88e-01 | 79.0% | 74.4% |
| 6xpdA01 | 1.20.1510.10 | Mainly Alpha › Up-down Bundle › Alpha-lytic protease prodomain-like › Cation efflux protein transmembrane domain | 0.53 | 39.0 | 2.98e-01 | 77.8% | 89.1% |
| 3d8lA00 | 1.10.8.940 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein, phage p2 ORF12 | 0.53 | 38.0 | 3.71e-01 | 77.8% | 68.1% |
| 1tjoB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 36.0 | 2.86e-01 | 72.8% | 54.3% |
| 1b8dA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.51 | 43.0 | 3.48e-01 | 95.1% | 99.4% |
| 4fjvA02 | 1.20.1300.20 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Peptidase C65 Otubain, subdomain 2 | 0.50 | 36.0 | 3.05e-01 | 76.5% | 71.5% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3942493 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.68 | 48.0 | 5.04e-01 | 87.7% | 80.0% |
| 3401183 | 4009.1.1.1 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom | 0.60 | 42.0 | 3.58e-01 | 74.1% | 78.6% |
| 3898842 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.56 | 28.0 | 2.72e-01 | 90.1% | 36.8% |
| 3243431 | 904.1.1.0 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain | 0.54 | 42.0 | 3.42e-01 | 85.2% | 63.1% |
| 3945517 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.53 | 29.0 | 2.81e-01 | 86.4% | 46.3% |
| 4471518 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.53 | 28.0 | 2.38e-01 | 100.0% | 26.9% |
| 119326 | 3073.1.1.1 ↗ | alpha arrays › ORF12 from Lactococcus lactis phage p2 › ORF12 from Lactococcus lactis phage p2 › ORF12 from Lactococcus lactis phage p2 › Phage_p2_ORF12 | 0.53 | 38.0 | 3.71e-01 | 77.8% | 68.1% |
| 3935047 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.52 | 37.0 | 3.73e-01 | 74.1% | 75.0% |
| 4429275 | 4954.1.1.1 ↗ | a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 | 0.51 | 39.0 | 2.87e-01 | 81.5% | 74.3% |
| 5077080 | 605.4.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein | 0.51 | 36.0 | 3.52e-01 | 75.3% | 92.2% |
D3
medium
residues 254-341
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nbiA01 | 1.10.8.1020 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain | 0.66 | 38.0 | 4.54e-01 | 87.5% | 86.2% |
| 1bvp101 | 1.10.250.10 | Mainly Alpha › Orthogonal Bundle › Bluetongue Virus 10, subunit 1; domain 1 › Bluetongue Virus 10, subunit 1, domain 1 | 0.60 | 46.0 | 4.20e-01 | 83.0% | 79.2% |
| 2ja2A05 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.58 | 45.0 | 4.42e-01 | 93.2% | 76.5% |
| 4g1tA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 34.0 | 3.86e-01 | 72.7% | 93.4% |
| 5u56A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.52 | 39.0 | 3.65e-01 | 81.8% | 80.4% |
| 4mh6A00 | 1.10.287.1700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 28.0 | 2.34e-01 | 97.7% | 29.6% |
| 1ynjD04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.51 | 46.0 | 3.89e-01 | 100.0% | 92.4% |
| 1zzwA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.51 | 34.0 | 2.94e-01 | 97.7% | 41.5% |
| 3lkdB01 | 1.20.1260.30 | Mainly Alpha › Up-down Bundle › Ferritin › N6 adenine-specific DNA methyltransferase, N-terminal domain | 0.50 | 44.0 | 3.53e-01 | 100.0% | 49.2% |
| 1c3yA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.50 | 37.0 | 3.52e-01 | 80.7% | 91.7% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4992089 | 5060.2.1.0 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain | 0.63 | 45.0 | 4.23e-01 | 100.0% | 60.9% |
| 5032423 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.61 | 44.0 | 3.75e-01 | 100.0% | 46.2% |
| 5003411 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.59 | 42.0 | 3.59e-01 | 100.0% | 44.7% |
| 5012854 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.58 | 42.0 | 3.88e-01 | 100.0% | 58.3% |
| 2577269 | 7103.1.1.1 ↗ | alpha arrays › MJ1004, C-terminal domain › MJ1004, C-terminal domain › MJ1004, C-terminal domain › PF31224 | 0.58 | 43.0 | 4.42e-01 | 79.5% | 93.1% |
| 5063418 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.58 | 41.0 | 3.69e-01 | 100.0% | 51.5% |
| 4954319 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.54 | 45.0 | 3.32e-01 | 98.9% | 34.8% |
| 4272154 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.53 | 41.0 | 4.09e-01 | 86.4% | 100.0% |