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MN689508.1__QGT52548.1__CHPC1170_000202__00024
Bact-VirMN689508.1__QGT52548.1__CHPC1170_000202__00024
Identity
- Accession:
- MN689508 ↗
- Kingdom:
- phage
Quality
91.0
mean pLDDT
Taxonomy
TaxID: 2675240
Cluster
View cluster (7 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 45-99
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07066.18 best | DUF3882 | 100.8 | 1.10e-28 | 96.4% | 32.7% |
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ktwA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.99 | 94.0 | 6.37e-01 | 98.2% | 33.8% |
| 4c2dA02 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.66 | 55.0 | 4.91e-01 | 100.0% | 94.1% |
| 2j0wA02 | 1.20.120.1320 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartokinase, catalytic domain | 0.65 | 46.0 | 3.86e-01 | 74.5% | 100.0% |
| 4i59A03 | 1.10.405.10 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 | 0.63 | 41.0 | 3.49e-01 | 85.5% | 39.1% |
| 4q5nA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.63 | 48.0 | 3.80e-01 | 83.6% | 83.9% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.62 | 45.0 | 3.95e-01 | 100.0% | 49.4% |
| 3umgA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.61 | 46.0 | 4.25e-01 | 98.2% | 63.4% |
| 6z0fA02 | 1.25.40.680 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain | 0.61 | 46.0 | 3.32e-01 | 83.6% | 60.2% |
| 1ym3A00 | 3.40.1050.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase | 0.60 | 53.0 | 3.61e-01 | 100.0% | 60.1% |
| 1dj8A00 | 1.10.890.10 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › HNS-dependent expression A | 0.59 | 43.0 | 3.95e-01 | 81.8% | 82.3% |
| 7tvyA01 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.58 | 47.0 | 3.79e-01 | 92.7% | 81.0% |
| 5je8B02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.58 | 37.0 | 2.83e-01 | 70.9% | 27.3% |
| 3r7tA02 | 1.10.300.10 | Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 | 0.57 | 38.0 | 3.28e-01 | 70.9% | 82.4% |
| 5mq1A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.56 | 42.0 | 3.37e-01 | 80.0% | 81.5% |
| 2nn5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 49.0 | 3.48e-01 | 100.0% | 81.9% |
| 3lcrB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 41.0 | 2.64e-01 | 80.0% | 32.7% |
| 5ulcX00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.55 | 41.0 | 3.17e-01 | 80.0% | 72.1% |
| 1xl3C00 | 1.20.1280.80 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.54 | 41.0 | 3.43e-01 | 80.0% | 59.3% |
| 5ko4A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.54 | 41.0 | 3.37e-01 | 81.8% | 87.1% |
| 3e7qA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 46.0 | 3.11e-01 | 96.4% | 55.3% |
| 6gc1A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 46.0 | 3.23e-01 | 100.0% | 50.3% |
| 3g0oA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.53 | 41.0 | 3.18e-01 | 83.6% | 81.8% |
| 2jo7A00 | 1.10.4170.10 | Mainly Alpha › Orthogonal Bundle › Glycosylphosphatidylinositol-anchored merozoite surface protein › Glycosylphosphatidylinositol-anchored merozoite surface protein | 0.53 | 43.0 | 2.92e-01 | 92.7% | 24.1% |
| 7z67A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 39.0 | 2.62e-01 | 80.0% | 66.5% |
| 1bccB02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.53 | 40.0 | 2.76e-01 | 81.8% | 65.4% |
| 2yi9A05 | 1.20.1270.270 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › VP1, C-terminal extension domain | 0.53 | 41.0 | 3.67e-01 | 100.0% | 61.0% |
| 7qaqA01 | 3.40.50.11710 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase | 0.52 | 42.0 | 2.99e-01 | 100.0% | 26.8% |
| 4ga4A01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.52 | 38.0 | 3.58e-01 | 92.7% | 64.2% |
| 1re0B02 | 1.10.1000.11 | Mainly Alpha › Orthogonal Bundle › Arf Nucleotide-binding Site Opener; domain 2 › Arf Nucleotide-binding Site Opener,domain 2 | 0.52 | 41.0 | 3.33e-01 | 90.9% | 83.5% |
| 3u4qB04 | 6.10.140.1030 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 33.0 | 3.10e-01 | 74.5% | 52.2% |
| 3h20A04 | 1.10.1240.50 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.50 | 43.0 | 3.69e-01 | 96.4% | 89.9% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1088701 | 2484.1.1.54 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF3882 | 0.99 | 94.0 | 6.37e-01 | 98.2% | 33.8% |
| 4282729 | 130.1.1.45 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › PF29669 | 0.67 | 54.0 | 4.56e-01 | 90.9% | 98.9% |
| 3477053 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 43.0 | 3.88e-01 | 89.1% | 48.8% |
| 3477054 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 45.0 | 4.31e-01 | 100.0% | 64.1% |
| 3291724 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.62 | 48.0 | 4.19e-01 | 87.3% | 92.2% |
| 4032129 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.62 | 41.0 | 3.91e-01 | 100.0% | 58.5% |
| 3484314 | 633.1.1.0 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain | 0.62 | 44.0 | 3.20e-01 | 74.5% | 100.0% |
| 3932497 | 109.26.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nucleoporin_C | 0.61 | 47.0 | 2.77e-01 | 85.5% | 24.2% |
| 3248928 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.61 | 49.0 | 4.93e-01 | 92.7% | 90.9% |
| 3643664 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.60 | 43.0 | 3.97e-01 | 78.2% | 69.3% |
| 5023652 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 48.0 | 3.32e-01 | 100.0% | 25.9% |
| 3668988 | 275.1.1.0 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | 0.59 | 42.0 | 3.69e-01 | 96.4% | 51.2% |
| 3789417 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 48.0 | 3.83e-01 | 92.7% | 78.3% |
| 3310234 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.58 | 40.0 | 3.62e-01 | 90.9% | 52.0% |
| 3605064 | 5.1.4.74 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vps16_N | 0.58 | 38.0 | 2.22e-01 | 76.4% | 7.8% |
| 3505813 | 101.1.1.123 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › MCRS_N | 0.57 | 41.0 | 4.02e-01 | 87.3% | 71.7% |
| 4180990 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.56 | 43.0 | 3.77e-01 | 81.8% | 85.0% |
| 3172113 | 101.1.10.48 ↗ | alpha arrays › HTH › HTH › Cyclin-like › PF29927, PF29928 | 0.56 | 48.0 | 3.08e-01 | 100.0% | 60.3% |
| 3393599 | 108.1.1.97 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 | 0.56 | 44.0 | 3.77e-01 | 90.9% | 82.1% |
| 3199446 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.56 | 44.0 | 3.64e-01 | 85.5% | 100.0% |
| 3358888 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.55 | 35.0 | 2.82e-01 | 90.9% | 31.8% |
| 3781604 | 633.1.1.1 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain | 0.55 | 39.0 | 3.14e-01 | 76.4% | 86.1% |
| 3905450 | 108.1.1.96 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 | 0.55 | 42.0 | 3.76e-01 | 89.1% | 88.2% |
| 3839206 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.55 | 44.0 | 3.89e-01 | 87.3% | 62.5% |
| 3714165 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.55 | 45.0 | 3.15e-01 | 92.7% | 45.8% |
| 4404319 | 109.34.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › 26S proteasome subunit Rpn2 N-terminal domain › 26S proteasome subunit Rpn2 N-terminal domain › RPN1_RPN2_N | 0.54 | 37.0 | 2.43e-01 | 72.7% | 29.1% |
| 5076320 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.54 | 42.0 | 3.50e-01 | 98.2% | 47.0% |
| 3741939 | 633.1.1.0 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain | 0.54 | 42.0 | 3.69e-01 | 100.0% | 56.5% |
| 3662685 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.54 | 40.0 | 2.74e-01 | 87.3% | 25.3% |
| 4669178 | 109.4.1.2072 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29151 | 0.53 | 41.0 | 2.92e-01 | 83.6% | 48.2% |
| 3628279 | 109.4.1.192 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 | 0.53 | 36.0 | 2.35e-01 | 70.9% | 20.3% |
| 3743539 | 5.1.4.645 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vps16_C | 0.53 | 35.0 | 2.50e-01 | 70.9% | 23.4% |
| 4503136 | 2004.1.1.60 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SKI | 0.52 | 42.0 | 3.02e-01 | 90.9% | 100.0% |
| 3321441 | 7574.1.1.11 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › DXP_synthase_N | 0.51 | 36.0 | 2.36e-01 | 80.0% | 80.3% |
| None | — | 0.51 | 41.0 | 2.94e-01 | 92.7% | 40.6% |