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MN689519.1__QGT53040.1__CHPC52_000697__00031
Bact-VirMN689519.1__QGT53040.1__CHPC52_000697__00031
Identity
- Accession:
- MN689519 ↗
- Kingdom:
- phage
Quality
94.5
mean pLDDT
Taxonomy
TaxID: 2675251
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-29
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24024.2 best | DUF7336 | 36.1 | 5.80e-09 | 100.0% | 41.7% |
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bzvB00 | 3.40.1690.10 | Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU | 0.65 | 51.0 | 3.89e-01 | 100.0% | 37.5% |
| 4kghA00 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.64 | 48.0 | 3.01e-01 | 96.6% | 14.5% |
| 2rckA01 | 3.15.10.30 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain | 0.64 | 49.0 | 3.00e-01 | 93.1% | 14.2% |
| 1h6lA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.62 | 45.0 | 2.65e-01 | 100.0% | 15.6% |
| 2icsA01 | 2.30.40.10 | Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 | 0.61 | 44.0 | 3.27e-01 | 93.1% | 37.6% |
| 2py5A05 | 4.10.80.20 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › DNA polymerase; domain 5 | 0.60 | 41.0 | 4.18e-01 | 93.1% | 90.0% |
| 5ek8A01 | 2.60.40.3330 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 42.0 | 3.01e-01 | 100.0% | 36.5% |
| 1m0wA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.58 | 46.0 | 3.30e-01 | 100.0% | 41.7% |
| 2n8xA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.56 | 41.0 | 2.76e-01 | 100.0% | 28.9% |
| 1p1hB01 | 3.30.2360.10 | Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain | 0.55 | 37.0 | 2.53e-01 | 100.0% | 53.4% |
| 1c4zA02 | 3.30.2160.10 | Alpha Beta › 2-Layer Sandwich › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain | 0.55 | 39.0 | 3.05e-01 | 86.2% | 38.3% |
| 1cp9A01 | 1.10.439.10 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 | 0.54 | 37.0 | 2.46e-01 | 82.8% | 13.0% |
| 1ilvA00 | 3.40.1210.10 | Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase | 0.54 | 35.0 | 2.25e-01 | 89.7% | 14.3% |
| 3uk7A01 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.54 | 35.0 | 2.39e-01 | 96.6% | 15.8% |
| 2d7vB00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.53 | 36.0 | 2.51e-01 | 89.7% | 20.9% |
| 3rd4B00 | 2.40.50.660 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 43.0 | 3.09e-01 | 93.1% | 22.0% |
| 3kw2A01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.53 | 40.0 | 3.24e-01 | 93.1% | 39.7% |
| 5ib9A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.53 | 36.0 | 2.21e-01 | 89.7% | 23.5% |
| 1vlrA01 | 3.30.200.40 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Scavenger mRNA decapping enzyme, N-terminal domain | 0.52 | 37.0 | 2.86e-01 | 93.1% | 63.3% |
| 1orvA01 | 2.140.10.30 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain | 0.52 | 36.0 | 2.10e-01 | 93.1% | 6.6% |
| 3iibA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.52 | 38.0 | 2.28e-01 | 86.2% | 24.0% |
| 5x8tT00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.51 | 35.0 | 2.48e-01 | 82.8% | 16.7% |
| 6qdws00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.51 | 38.0 | 2.80e-01 | 82.8% | 22.0% |
| 7xoiD01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.50 | 36.0 | 2.63e-01 | 82.8% | 20.6% |
| 5ejlA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.50 | 38.0 | 2.70e-01 | 96.6% | 87.9% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3227392 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.75 | 56.0 | 5.57e-01 | 100.0% | 82.9% |
| 4682148 | 7573.1.1.4 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase | 0.72 | 52.0 | 3.27e-01 | 89.7% | 13.3% |
| 3936757 | 7516.1.1.69 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_92 | 0.72 | 54.0 | 3.11e-01 | 96.6% | 8.0% |
| 4460236 | 2484.1.1.232 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › EutA | 0.72 | 57.0 | 3.68e-01 | 93.1% | 17.4% |
| 2320777 | 206.1.3.14 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH_synth_ATP | 0.71 | 57.0 | 3.58e-01 | 100.0% | 17.2% |
| 3477732 | 59.1.1.0 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like | 0.71 | 52.0 | 4.00e-01 | 100.0% | 32.2% |
| 3382011 | 252.2.1.1 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 | 0.70 | 54.0 | 4.19e-01 | 100.0% | 41.2% |
| 3316686 | 2484.1.1.157 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 | 0.70 | 53.0 | 3.19e-01 | 100.0% | 15.8% |
| 3244416 | 7516.1.1.69 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_92 | 0.70 | 50.0 | 2.91e-01 | 93.1% | 7.6% |
| 3839724 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.68 | 50.0 | 3.07e-01 | 93.1% | 11.7% |
| 3222747 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.67 | 43.0 | 3.00e-01 | 79.3% | 18.0% |
| 4995819 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.67 | 48.0 | 3.23e-01 | 96.6% | 19.3% |
| 3456292 | 2.1.1.134 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › GIDE | 0.67 | 51.0 | 3.36e-01 | 93.1% | 21.4% |
| 3962258 | 206.1.3.27 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › CP_ATPgrasp_2 | 0.67 | 49.0 | 3.28e-01 | 93.1% | 18.7% |
| 4283893 | 7527.1.1.1 ↗ | a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE | 0.67 | 50.0 | 3.03e-01 | 93.1% | 11.0% |
| 5009807 | 7592.1.1.5 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › Csx1_CARF | 0.67 | 52.0 | 3.44e-01 | 100.0% | 20.7% |
| 3266581 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.66 | 53.0 | 2.98e-01 | 100.0% | 12.9% |
| 1222168 | 11.1.1.108 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 | 0.64 | 45.0 | 4.32e-01 | 93.1% | 62.8% |
| 4219813 | 3747.1.1.2 ↗ | a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod,Flg_bbr_C | 0.64 | 48.0 | 3.44e-01 | 96.6% | 25.5% |
| 3655562 | 7510.1.1.1 ↗ | a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Iso_dh | 0.64 | 51.0 | 3.21e-01 | 96.6% | 15.1% |
| 2754690 | 7510.1.1.1 ↗ | a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Iso_dh | 0.63 | 49.0 | 3.10e-01 | 100.0% | 18.8% |
| 3699016 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.63 | 46.0 | 2.58e-01 | 93.1% | 6.0% |
| 3235630 | 209.1.1.14 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › PF29411 | 0.63 | 47.0 | 2.97e-01 | 100.0% | 19.0% |
| 3267858 | 389.1.1.49 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_Teneurin | 0.61 | 42.0 | 3.72e-01 | 93.1% | 45.0% |
| 4946767 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.59 | 44.0 | 2.74e-01 | 93.1% | 16.4% |
| 3980535 | 1.1.13.51 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_P2_GpU | 0.59 | 44.0 | 3.08e-01 | 93.1% | 20.0% |
| 4130418 | 7527.1.1.1 ↗ | a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE | 0.58 | 41.0 | 2.53e-01 | 96.6% | 42.6% |
| 2794605 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.58 | 40.0 | 3.83e-01 | 86.2% | 58.5% |
| 3310689 | 5.3.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II | 0.56 | 40.0 | 2.81e-01 | 89.7% | 20.8% |
| 3820636 | 5.3.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II | 0.55 | 40.0 | 2.73e-01 | 82.8% | 18.5% |
| 4986251 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.55 | 37.0 | 3.07e-01 | 100.0% | 82.2% |
| 4009415 | 3747.1.1.2 ↗ | a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod,Flg_bbr_C | 0.55 | 35.0 | 2.70e-01 | 96.6% | 45.0% |
| 3238908 | 7516.1.1.69 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_92 | 0.53 | 35.0 | 2.12e-01 | 96.6% | 7.7% |
| 3185221 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.53 | 36.0 | 2.10e-01 | 93.1% | 9.4% |
| 3986987 | 205.1.1.53 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_6, Fer4_7, Fer4_11 | 0.53 | 38.0 | 2.57e-01 | 100.0% | 43.3% |
| 4996331 | 304.51.1.7 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 | 0.52 | 38.0 | 2.55e-01 | 82.8% | 31.7% |
| 1824189 | 327.6.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › Germane | 0.51 | 37.0 | 2.66e-01 | 100.0% | 23.5% |
| 3639684 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.50 | 35.0 | 2.24e-01 | 89.7% | 13.6% |
| 3731446 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.50 | 36.0 | 2.40e-01 | 100.0% | 82.2% |