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MN689530.1__QGT53599.1__CHPC974_001264__00045

Bact-Vir

MN689530.1__QGT53599.1__CHPC974_001264__00045

Identity

Accession:
MN689530 ↗
Kingdom:
phage

Quality

71.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sandinevirus› Lactococcus_phage_CHPC974

TaxID: 2675262

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-60
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04936.17 best DUF658 28.2 2.20e-06 98.2% 25.3%
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 65.0 6.15e-01 98.2% 80.9%
1hnfA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 44.0 3.95e-01 96.4% 49.4%
1s6lA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 49.0 5.10e-01 87.5% 84.6%
4esnA00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.64 53.0 4.82e-01 94.6% 98.7%
4myjA04 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 46.0 3.48e-01 98.2% 33.3%
4obiA00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.63 53.0 4.70e-01 98.2% 100.0%
5bviA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.62 53.0 3.77e-01 98.2% 87.4%
3ld7A00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.62 52.0 4.56e-01 96.4% 97.7%
5e16A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 45.0 3.35e-01 98.2% 31.2%
1zoqA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.62 53.0 3.72e-01 98.2% 88.5%
1ne6A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 44.0 3.44e-01 98.2% 35.2%
3oouA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 47.0 4.77e-01 87.5% 85.5%
3prbA01 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.60 48.0 4.11e-01 96.4% 96.2%
5fmvA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 43.0 3.78e-01 100.0% 51.2%
3gm8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 43.0 3.83e-01 96.4% 53.8%
3d3aA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 43.0 3.28e-01 98.2% 32.8%
2mtzA01 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.58 37.0 3.94e-01 85.7% 74.0%
5jheA01 2.40.100.10 Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like 0.58 51.0 3.50e-01 100.0% 95.5%
4b8vA02 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.58 41.0 3.79e-01 87.5% 57.5%
3arxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 42.0 3.39e-01 96.4% 39.6%
4haoA02 2.60.200.30 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 0.57 45.0 3.55e-01 91.1% 100.0%
2w3jA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 47.0 3.47e-01 98.2% 37.2%
1osyA00 2.60.40.1790 Mainly Beta › Sandwich › Immunoglobulin-like › Fungal immunomodulatory protein Fve 0.55 48.0 3.76e-01 100.0% 47.4%
1ci9A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 47.0 2.88e-01 100.0% 66.6%
2vsdA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 3.56e-01 98.2% 51.6%
3afoB02 2.60.200.30 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 0.54 46.0 3.54e-01 100.0% 100.0%
2wngA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 3.73e-01 98.2% 56.3%
1d2oA01 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.54 44.0 3.51e-01 98.2% 46.7%
3i7jA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 46.0 2.97e-01 100.0% 59.3%
1zhhB01 3.30.450.220 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › LuxQ periplasmic domain, N-terminal subdomain 0.52 42.0 3.19e-01 94.6% 61.8%
5c8qB02 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.52 38.0 4.19e-01 78.6% 95.7%
1e0gA00 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.52 34.0 3.53e-01 87.5% 77.1%
6grqA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.60e-01 98.2% 56.8%
1njhA00 2.70.180.10 Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › Hypothetical protein YojF 0.51 43.0 3.59e-01 100.0% 76.9%
3n0aA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 41.0 3.27e-01 96.4% 98.5%
2wshA00 3.40.1440.40 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.51 45.0 3.42e-01 100.0% 60.4%
1cs6A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 38.0 3.31e-01 98.2% 52.2%
5tipA01 2.70.9.10 Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Adenovirus Type 2 Hexon, domain 4 0.50 44.0 3.03e-01 98.2% 48.4%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3587703 101.1.14.0 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases 0.88 72.0 7.61e-01 91.1% 100.0%
4384880 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.86 75.0 6.37e-01 92.9% 65.9%
4414927 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.81 71.0 6.60e-01 96.4% 84.1%
3171408 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.79 64.0 6.70e-01 87.5% 100.0%
2876 101.1.14.2 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like 0.75 65.0 6.12e-01 98.2% 79.7%
3824036 230.5.1.0 ↗ a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain 0.70 44.0 4.93e-01 98.2% 90.0%
3307087 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.68 43.0 4.83e-01 98.2% 90.0%
4427421 3529.1.1.6 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Band_7 0.68 44.0 4.75e-01 100.0% 82.2%
3944975 3529.1.1.6 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Band_7 0.68 42.0 4.24e-01 98.2% 63.6%
4008901 3462.1.1.20 ↗ extended segments › V-type proton ATPase subunit G › V-type proton ATPase subunit G › V-type proton ATPase subunit G › Band_7 0.67 42.0 4.68e-01 98.2% 87.5%
3572286 11.1.1.178 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.63 44.0 3.81e-01 98.2% 48.2%
4981928 101.1.2.892 ↗ alpha arrays › HTH › HTH › winged helix domain › ArsR 0.62 47.0 4.67e-01 91.1% 76.7%
3838194 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.62 40.0 4.44e-01 87.5% 84.4%
3477098 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.61 43.0 3.28e-01 96.4% 31.1%
4928993 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 45.0 3.90e-01 94.6% 51.8%
5081981 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 42.0 3.69e-01 96.4% 48.2%
3903953 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.61 41.0 4.28e-01 85.7% 78.0%
3542590 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 43.0 3.67e-01 96.4% 46.7%
4944610 11.1.4.136 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Peptidase_C14 0.60 43.0 3.68e-01 96.4% 47.8%
3320955 101.15.1.5 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.59 40.0 3.87e-01 85.7% 61.5%
3458171 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.59 40.0 3.86e-01 85.7% 61.5%
3900678 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 43.0 3.69e-01 96.4% 50.0%
3563545 11.1.1.178 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.58 43.0 3.08e-01 98.2% 27.3%
3964920 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.58 41.0 4.09e-01 78.6% 72.4%
3477628 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 45.0 3.58e-01 98.2% 41.7%
5023642 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 41.0 3.52e-01 98.2% 47.8%
3199916 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.57 44.0 3.26e-01 98.2% 32.4%
4456842 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.56 43.0 4.21e-01 80.4% 76.7%
3165082 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.56 40.0 4.26e-01 76.8% 90.0%
3880780 11.1.1.463 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_C17orf99 0.56 43.0 3.66e-01 98.2% 50.5%
3631347 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.56 42.0 2.56e-01 83.9% 16.5%
1758716 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.56 40.0 4.19e-01 80.4% 82.7%
4630854 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.55 42.0 4.45e-01 80.4% 92.0%
3720958 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.55 40.0 4.19e-01 80.4% 86.0%
4399120 308.2.1.0 ↗ a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain 0.55 43.0 3.90e-01 83.9% 85.3%
3056605 11.1.1.170 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_66 0.54 40.0 3.37e-01 98.2% 46.3%
4022446 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.54 41.0 4.19e-01 85.7% 83.6%
5039364 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 42.0 3.61e-01 96.4% 53.3%
3734463 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.54 44.0 3.84e-01 98.2% 90.5%
3497638 11.2.1.22 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › CC2D2AN-C2 0.53 46.0 3.48e-01 100.0% 40.8%
1759182 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.53 39.0 4.03e-01 78.6% 86.3%
3909331 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.52 44.0 3.63e-01 100.0% 51.4%
3766606 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.52 44.0 3.31e-01 100.0% 37.2%
3390961 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 3.29e-01 98.2% 59.0%
3798117 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.51 41.0 3.58e-01 100.0% 89.0%
3935475 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 44.0 2.82e-01 98.2% 25.0%