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MN695334.1__QGT54365.1__b3_0121__00107

Bact-Vir

MN695334.1__QGT54365.1__b3_0121__00107

Identity

Accession:
MN695334 ↗
Kingdom:
phage

Quality

69.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_B3

TaxID: 2674978

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-65
PDB
Domain cluster: rep: LacPavin_0818_WC55_scaffold_2946_prodigal-single.1__X__X__00143__D4-57
D2 high residues 183-235
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a18X01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.64 51.0 4.53e-01 88.7% 94.9%
1mkfA02 2.60.40.1340 Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like 0.63 52.0 3.77e-01 100.0% 91.3%
3d31A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 33.0 3.53e-01 88.7% 60.9%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.59 40.0 2.73e-01 71.7% 85.9%
2q1mA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.58 49.0 3.92e-01 100.0% 97.4%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.58 49.0 3.68e-01 100.0% 45.5%
1d6uA03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.56 41.0 2.50e-01 81.1% 42.4%
4ekuA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 37.0 2.96e-01 71.7% 78.6%
1uenA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 45.0 3.55e-01 100.0% 71.2%
3w1eA03 2.40.10.410 Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain 0.53 44.0 3.84e-01 100.0% 94.4%
2olgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 43.0 3.49e-01 98.1% 73.0%
4ad8A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 41.0 2.62e-01 88.7% 83.2%
3jb4C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 42.0 2.88e-01 100.0% 67.2%
1ksiA03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.52 36.0 2.20e-01 77.4% 19.0%
5kfzA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.51 43.0 3.43e-01 100.0% 88.6%
3up1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.49e-01 100.0% 76.0%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 40.0 3.77e-01 88.7% 87.9%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4929776 3115.5.1.0 ↗ a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB 0.70 47.0 4.38e-01 71.7% 81.4%
3896560 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.68 49.0 3.45e-01 77.4% 37.1%
3299532 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 54.0 4.45e-01 100.0% 90.9%
3732197 11.1.1.643 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_POM152 0.65 52.0 4.16e-01 90.6% 79.1%
4084879 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.64 48.0 4.16e-01 83.0% 72.9%
4989205 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.60 42.0 3.04e-01 77.4% 44.4%
5054476 3010.1.1.0 ↗ a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains 0.60 44.0 3.59e-01 79.2% 59.0%
3241890 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 48.0 3.99e-01 94.3% 81.0%
5010503 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 49.0 4.16e-01 100.0% 80.0%
3209918 11.1.1.643 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_POM152 0.58 46.0 3.74e-01 92.5% 85.5%
5066196 3010.1.1.0 ↗ a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains 0.58 46.0 3.76e-01 90.6% 57.3%
3499689 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 45.0 3.84e-01 92.5% 78.9%
3650798 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 45.0 3.76e-01 100.0% 79.1%
3794360 11.1.1.391 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M,MG2,A2M_BRD,MG3 0.56 44.0 2.42e-01 90.6% 12.3%
4304232 377.4.1.2 ↗ few secondary structure elements › Glucocorticoid receptor-like › YlxR-like › YlxR-like › RRG8 0.55 42.0 2.95e-01 86.8% 26.9%
3829376 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.55 42.0 3.20e-01 88.7% 55.9%
3331566 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 44.0 3.57e-01 100.0% 75.7%
3450207 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 42.0 3.50e-01 92.5% 97.1%
4284039 11.1.4.102 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › SOP4 0.53 36.0 2.65e-01 71.7% 89.7%
3663413 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.53 45.0 3.32e-01 100.0% 96.8%
3702051 1116.1.1.0 ↗ a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain 0.53 41.0 2.93e-01 94.3% 62.0%
3544841 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.52 42.0 3.34e-01 100.0% 51.9%
3268650 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 43.0 3.22e-01 94.3% 68.6%
3396686 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.52 38.0 3.34e-01 83.0% 95.6%
3392676 3785.1.1.1 ↗ a+b three layers › Suppressor of Fused, C-terminal domain › Suppressor of Fused, C-terminal domain › Suppressor of Fused, C-terminal domain › SARA_C 0.52 45.0 3.24e-01 100.0% 54.4%
3914722 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 37.0 3.41e-01 79.2% 92.0%
3888308 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 3.10e-01 100.0% 56.2%
D3 medium residues 87-147_161-181
PDB