←Back to structures

MN695334.1__QGT54377.1__b3_0133__00119

Bact-Vir

MN695334.1__QGT54377.1__b3_0133__00119

Identity

Accession:
MN695334 ↗
Kingdom:
phage

Quality

66.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_B3

TaxID: 2674978

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-99
PDB
D2 high residues 107-151
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.63 43.0 3.11e-01 73.3% 52.4%
3vwoA02 2.10.70.40 Mainly Beta › Ribbon › Complement Module; domain 1 › peptidoglycan hydrolase 0.58 41.0 4.03e-01 77.8% 94.1%
3pz8C00 2.40.240.130 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › 0.55 43.0 3.77e-01 100.0% 92.6%
2i0kA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.53 42.0 3.21e-01 97.8% 55.6%
1h0hB01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 37.0 2.62e-01 77.8% 74.7%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 41.0 3.31e-01 100.0% 84.0%
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.51 43.0 3.52e-01 100.0% 50.0%
2nutB04 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.51 40.0 2.69e-01 100.0% 40.7%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3785041 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.60 41.0 3.43e-01 77.8% 40.0%
4958339 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.55 44.0 3.42e-01 91.1% 51.8%
4028543 929.1.1.0 ↗ beta duplicates or obligate multimers › Resistin › Resistin › Resistin 0.55 43.0 3.81e-01 93.3% 77.3%
1851169 1.1.8.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › aSelB_III 0.54 45.0 3.45e-01 100.0% 63.8%
3789543 6.1.1.40 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › PF29113 0.53 36.0 2.82e-01 77.8% 30.0%
3287206 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.52 41.0 3.22e-01 100.0% 59.2%
3915843 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.52 37.0 3.59e-01 82.2% 100.0%
4944192 221.1.1.242 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Fer2_2 0.52 39.0 3.50e-01 100.0% 81.2%
3767391 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.52 43.0 3.73e-01 97.8% 81.3%
3945749 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 42.0 3.42e-01 100.0% 72.0%
4062042 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 41.0 3.80e-01 100.0% 83.1%
3708848 2003.1.5.165 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11, Methyltransf_23 0.51 37.0 2.37e-01 88.9% 57.6%
4012802 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 41.0 3.28e-01 100.0% 67.3%
3244686 384.1.1.0 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like 0.51 42.0 2.87e-01 93.3% 71.2%