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MN695334.1__QGT54434.1__b3_0190__00176

Bact-Vir

MN695334.1__QGT54434.1__b3_0190__00176

Identity

Accession:
MN695334 ↗
Kingdom:
phage

Quality

74.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_B3

TaxID: 2674978

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-47
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7bjkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.78 57.0 4.31e-01 100.0% 32.7%
3qvnA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.75 57.0 4.26e-01 100.0% 33.3%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.71 61.0 4.80e-01 100.0% 53.1%
3h96C00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.69 58.0 4.21e-01 100.0% 44.2%
2ebfX01 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.68 54.0 3.75e-01 100.0% 40.4%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.67 55.0 4.35e-01 100.0% 56.0%
3r5lA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 57.0 4.29e-01 100.0% 50.0%
3zoqC00 6.20.250.30 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.66 52.0 5.11e-01 100.0% 83.0%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 55.0 3.94e-01 100.0% 35.8%
4ag4A02 2.60.120.1190 Mainly Beta › Sandwich › Jelly Rolls › 0.65 55.0 3.74e-01 100.0% 47.0%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 53.0 3.53e-01 100.0% 27.0%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 53.0 4.19e-01 100.0% 65.7%
1wvqA00 3.40.1520.10 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1634 › Ta1353-like 0.63 51.0 3.64e-01 100.0% 61.3%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.63 50.0 3.57e-01 100.0% 39.0%
2avxA00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.62 46.0 3.16e-01 82.6% 83.0%
4qpwA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 52.0 3.71e-01 100.0% 49.3%
6jhpA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.60 51.0 3.10e-01 100.0% 15.2%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.60 48.0 4.04e-01 100.0% 63.0%
3ef2A02 3.30.460.70 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.59 42.0 3.16e-01 80.4% 66.7%
4aw7A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 42.0 3.34e-01 100.0% 33.1%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.58 49.0 4.42e-01 100.0% 69.7%
3loiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 49.0 3.36e-01 100.0% 27.5%
1s3rA04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.58 50.0 3.84e-01 100.0% 44.1%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 44.0 2.82e-01 93.5% 38.3%
1n26A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 43.0 3.84e-01 100.0% 55.1%
2eddA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 43.0 3.49e-01 100.0% 38.4%
2hpuA02 3.30.70.2050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 42.0 3.90e-01 95.7% 61.9%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 42.0 2.65e-01 89.1% 26.6%
4p04A01 2.60.40.3100 Mainly Beta › Sandwich › Immunoglobulin-like › Arylsulphate sulphotransferase monomer, N-terminal domain 0.56 45.0 3.64e-01 100.0% 46.2%
1dgsA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.56 45.0 3.76e-01 100.0% 52.6%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.55 42.0 3.13e-01 100.0% 31.1%
2vf7B03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 44.0 2.80e-01 100.0% 21.6%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 42.0 3.51e-01 100.0% 49.0%
2mraA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.54 44.0 3.43e-01 100.0% 47.9%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.53 41.0 3.54e-01 100.0% 56.5%
4h4nA00 2.60.40.3750 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 42.0 3.91e-01 100.0% 72.6%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.52 37.0 2.68e-01 80.4% 72.0%
1mzkA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.52 41.0 3.21e-01 100.0% 94.3%
3n40P04 2.60.40.2400 Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, domain C 0.52 39.0 3.51e-01 100.0% 57.5%
1va0B02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.51 38.0 3.02e-01 100.0% 33.9%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.51 39.0 3.37e-01 97.8% 54.3%
6kryA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 39.0 3.10e-01 100.0% 73.2%
4h3wA02 2.60.120.1260 Mainly Beta › Sandwich › Jelly Rolls › 0.51 39.0 2.97e-01 100.0% 65.8%
7r3eB02 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.51 35.0 2.56e-01 78.3% 72.4%
1j5yA02 3.30.1340.20 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 3H domain 0.51 42.0 3.33e-01 100.0% 50.5%
2irmA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.50 40.0 2.48e-01 100.0% 87.3%
5l10B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.50 34.0 2.50e-01 76.1% 83.5%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995671 3115.1.1.12 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 0.89 77.0 7.49e-01 100.0% 88.0%
4004704 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.88 75.0 7.60e-01 100.0% 95.6%
3968122 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.87 74.0 7.52e-01 100.0% 95.6%
4463006 3115.2.1.0 ↗ a+b two layers › GP2-like › GP2 › GP2 0.87 75.0 7.62e-01 97.8% 97.8%
4013514 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.87 78.0 5.89e-01 100.0% 53.3%
3969006 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.86 72.0 7.33e-01 100.0% 95.6%
4937773 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.86 77.0 7.15e-01 100.0% 96.6%
4160542 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.86 77.0 7.11e-01 100.0% 96.6%
4007508 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.85 71.0 6.97e-01 100.0% 86.0%
5065436 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.84 74.0 6.66e-01 100.0% 87.5%
4939739 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.84 74.0 6.81e-01 100.0% 94.9%
3975705 3115.6.1.0 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon 0.83 69.0 6.74e-01 100.0% 86.0%
5067865 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.83 73.0 6.39e-01 100.0% 80.0%
5012895 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.83 74.0 6.97e-01 100.0% 98.2%
3941732 3115.6.1.0 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon 0.83 74.0 7.19e-01 100.0% 90.0%
5015713 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.83 73.0 6.73e-01 100.0% 98.3%
4995672 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.82 72.0 7.00e-01 100.0% 90.0%
4969863 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.82 70.0 6.04e-01 100.0% 74.7%
2831852 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.81 70.0 5.46e-01 100.0% 55.4%
3185137 228.1.1.1 ↗ a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C 0.78 57.0 4.18e-01 100.0% 30.0%
3943126 3115.4.1.0 ↗ a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 0.77 67.0 6.01e-01 100.0% 78.5%
4651135 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.77 52.0 4.27e-01 100.0% 38.8%
5080205 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.77 68.0 6.69e-01 100.0% 92.0%
4962335 3115.5.1.1 ↗ a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.74 65.0 5.86e-01 100.0% 76.9%
3942988 4187.2.1.1 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 › NAGPA 0.74 61.0 5.58e-01 100.0% 69.2%
3216210 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.72 60.0 5.88e-01 100.0% 98.0%
3965010 3115.4.1.1 ↗ a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 0.71 60.0 4.90e-01 100.0% 55.6%
5081134 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.68 56.0 5.29e-01 100.0% 80.0%
7410 219.1.1.64 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PMT_C3 0.68 54.0 3.76e-01 100.0% 40.6%
3340123 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.66 58.0 4.67e-01 100.0% 52.2%
4948543 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.65 53.0 4.39e-01 100.0% 60.0%
4994656 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.64 54.0 3.45e-01 100.0% 19.6%
5000686 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.64 52.0 3.28e-01 100.0% 16.1%
3439471 12.3.1.41 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Raffinose_syn 0.63 47.0 3.22e-01 84.8% 38.4%
4807171 5089.1.1.1 ↗ beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Thiol_cytolysin 0.63 51.0 3.25e-01 100.0% 41.5%
4946875 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.63 51.0 3.28e-01 100.0% 17.4%
3929801 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.63 51.0 4.13e-01 95.7% 94.7%
4426711 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.63 43.0 2.74e-01 73.9% 43.9%
3672250 207.1.1.116 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_FBXL15 0.62 50.0 3.44e-01 100.0% 23.7%
3218957 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.61 50.0 3.84e-01 95.7% 79.1%
4973338 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.61 50.0 3.18e-01 100.0% 18.6%
5078886 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.60 46.0 3.67e-01 100.0% 38.2%
4028488 224.1.1.0 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.60 46.0 3.45e-01 100.0% 30.7%
2006900 302.4.1.0 ↗ a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.57 46.0 3.73e-01 100.0% 47.1%
3739303 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.56 46.0 3.59e-01 100.0% 48.3%
3817222 221.1.1.1 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Fer2 0.56 44.0 3.78e-01 100.0% 71.9%
3283168 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.55 45.0 2.87e-01 97.8% 28.1%
3511356 4056.1.1.1 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_prot_Gp6 0.55 43.0 3.54e-01 100.0% 94.3%
3783396 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 43.0 3.86e-01 97.8% 97.3%
3285401 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.54 40.0 3.76e-01 100.0% 65.3%
3615237 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.54 44.0 2.69e-01 95.7% 15.3%
4796557 4012.3.1.0 ↗ a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 0.54 42.0 4.01e-01 100.0% 84.1%
5073588 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.53 41.0 2.73e-01 100.0% 19.0%
2324048 1185.1.1.1 ↗ a+b two layers › A hypothetical protein from Neisseria gonorrhoeae › A hypothetical protein from Neisseria gonorrhoeae › A hypothetical protein from Neisseria gonorrhoeae › DUF6911 0.53 41.0 3.16e-01 100.0% 33.3%
3619035 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.52 38.0 3.09e-01 82.6% 38.9%
3648714 11.2.1.37 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF6598 0.51 39.0 3.08e-01 100.0% 47.8%
3615104 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.50 37.0 3.00e-01 80.4% 41.1%