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MN695334.1__QGT54442.1__b3_0199__00184

Bact-Vir

MN695334.1__QGT54442.1__b3_0199__00184

Identity

Accession:
MN695334 ↗
Kingdom:
phage

Quality

80.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_B3

TaxID: 2674978

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-102
PDB
Domain cluster: rep: GQ357915.1__ACV50164.1__X__00141__D6-119
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF14279.13 best HNH_5 33.5 4.60e-08 41.5% 55.4%
PF01844.30 HNH 33.4 5.50e-08 40.4% 66.0%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qgpA00 1.10.30.50 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › 0.78 48.0 5.17e-01 80.9% 71.1%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 32.0 3.25e-01 81.9% 56.0%
2k0mA00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 38.0 3.75e-01 84.0% 62.5%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3952776 377.1.1.88 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.82 48.0 5.64e-01 81.9% 84.6%
5049537 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.81 47.0 4.76e-01 81.9% 58.5%
4941657 377.1.1.88 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.80 51.0 5.71e-01 79.8% 81.3%
5019258 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.80 52.0 5.67e-01 81.9% 78.8%
3948700 378.1.1.9 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 0.76 48.0 4.40e-01 80.9% 49.2%
3587782 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.65 52.0 4.90e-01 93.6% 71.8%
3659003 5.1.4.122 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF295 0.55 45.0 3.20e-01 89.4% 50.5%
3964769 2008.1.1.78 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_endonuc 0.53 46.0 3.79e-01 98.9% 89.4%
D2 high residues 118-186
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.67 51.0 5.52e-01 85.5% 98.3%
2kdsA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 49.0 4.59e-01 91.3% 65.1%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 48.0 4.99e-01 100.0% 85.9%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 49.0 5.15e-01 88.4% 91.9%
2qggA02 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.64 53.0 5.06e-01 92.8% 92.8%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 47.0 4.68e-01 81.2% 75.0%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 48.0 4.95e-01 89.9% 87.3%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 56.0 5.35e-01 100.0% 83.7%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.64 52.0 4.12e-01 91.3% 60.0%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.63 51.0 5.00e-01 91.3% 81.8%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.63 53.0 4.78e-01 94.2% 91.6%
4wsfA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 46.0 4.03e-01 81.2% 72.1%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.62 42.0 4.58e-01 78.3% 90.7%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 48.0 5.00e-01 84.1% 96.8%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 54.0 5.41e-01 100.0% 100.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 47.0 4.47e-01 88.4% 77.1%
1ljoA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 47.0 4.66e-01 89.9% 93.3%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 44.0 4.59e-01 87.0% 93.5%
3tm8B00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.57 43.0 2.87e-01 98.6% 18.6%
3meuB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 47.0 4.60e-01 89.9% 94.6%
3fgeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 40.0 3.05e-01 75.4% 69.8%
4he6A00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 46.0 4.27e-01 100.0% 98.9%
2evrA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.52 44.0 3.52e-01 97.1% 50.0%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3508169 4.1.1.25 ↗ beta barrels › SH3 › SH3 › SH3 › PAZ 0.78 69.0 5.37e-01 97.1% 97.2%
3676844 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 58.0 5.71e-01 98.6% 86.7%
4931822 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 50.0 5.17e-01 89.9% 83.1%
4605602 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 49.0 5.03e-01 79.7% 81.5%
3256432 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 51.0 5.40e-01 92.8% 95.0%
3303889 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.66 58.0 5.65e-01 98.6% 89.3%
4629022 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.66 48.0 4.86e-01 84.1% 75.7%
4376886 4.1.1.241 ↗ beta barrels › SH3 › SH3 › SH3 › NifZ 0.66 53.0 5.03e-01 85.5% 93.8%
4929262 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.66 59.0 4.53e-01 100.0% 60.6%
3177842 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.66 53.0 4.48e-01 89.9% 69.2%
3564972 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 52.0 5.17e-01 88.4% 82.9%
4029199 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 58.0 3.27e-01 100.0% 9.8%
3490245 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 54.0 4.96e-01 91.3% 86.7%
4945344 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 54.0 3.44e-01 89.9% 33.5%
3586469 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.65 57.0 5.37e-01 100.0% 80.0%
3521327 4.1.1.310 ↗ beta barrels › SH3 › SH3 › SH3 › PF26050 0.65 55.0 5.31e-01 94.2% 100.0%
4565837 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.65 58.0 5.21e-01 100.0% 93.7%
5032461 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 51.0 5.25e-01 87.0% 96.9%
4271974 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.65 49.0 5.04e-01 87.0% 85.9%
3550047 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.65 53.0 4.01e-01 91.3% 58.2%
3830083 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.65 48.0 3.80e-01 84.1% 40.0%
4031510 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 52.0 4.84e-01 91.3% 76.7%
3394215 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 56.0 4.98e-01 100.0% 67.0%
4018672 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.64 54.0 4.58e-01 94.2% 74.8%
3176265 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.64 56.0 4.37e-01 100.0% 61.9%
5073368 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 50.0 4.98e-01 87.0% 82.9%
3629536 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 54.0 4.89e-01 100.0% 69.5%
3855972 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.63 46.0 4.73e-01 84.1% 81.5%
4149821 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 46.0 4.90e-01 89.9% 93.3%
3549321 4.11.1.5 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24, PF31032 0.63 55.0 4.24e-01 100.0% 60.0%
4203993 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.62 55.0 4.97e-01 100.0% 91.6%
None — 0.62 53.0 3.96e-01 94.2% 61.2%
3768347 4.1.1.230 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7030 0.62 47.0 4.87e-01 82.6% 98.5%
3905549 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 52.0 4.57e-01 100.0% 61.9%
3245045 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.61 50.0 3.61e-01 98.6% 31.5%
4120629 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 52.0 5.10e-01 97.1% 90.7%
3924975 4.1.1.377 ↗ beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.60 52.0 5.02e-01 100.0% 88.7%
3344796 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.60 48.0 4.53e-01 87.0% 72.3%
3510024 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.59 47.0 4.08e-01 88.4% 83.6%
3396897 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.59 43.0 4.51e-01 78.3% 96.8%
3934192 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 44.0 4.61e-01 84.1% 95.0%
3935716 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.58 50.0 4.91e-01 97.1% 93.3%
3742084 220.1.1.67 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.58 43.0 3.36e-01 82.6% 49.1%
4466506 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 48.0 4.75e-01 97.1% 97.3%
3927213 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.58 46.0 4.60e-01 87.0% 90.0%
1114686 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.57 39.0 4.17e-01 79.7% 87.5%
3487837 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 50.0 3.61e-01 98.6% 38.0%
3484606 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.57 49.0 4.68e-01 100.0% 95.3%
3472335 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 41.0 4.27e-01 87.0% 84.6%
4022025 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.57 48.0 3.91e-01 100.0% 85.5%
4514731 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 47.0 4.48e-01 98.6% 81.2%
3549198 5.1.4.285 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, Beta-prop_RIG_2nd 0.52 39.0 2.52e-01 82.6% 18.4%
3315951 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.52 38.0 3.70e-01 81.2% 88.6%
3970225 1.1.13.68 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF27125 0.50 34.0 3.23e-01 72.5% 88.9%