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MN695334.1__QGT54479.1__b3_0236__00221

Bact-Vir

MN695334.1__QGT54479.1__b3_0236__00221

Identity

Accession:
MN695334 ↗
Kingdom:
phage

Quality

84.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_B3

TaxID: 2674978

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-104
PDB
Domain cluster: rep: OP056089.1__UYD72102.1__X__00002__D5-102
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.90 76.0 7.55e-01 95.1% 84.9%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 30.0 3.71e-01 87.4% 68.9%
1dzkA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 43.0 3.91e-01 79.6% 85.1%
1a73A00 3.90.75.10 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A 0.58 48.0 4.15e-01 90.3% 68.5%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 23.0 3.19e-01 83.5% 75.6%
5i4dA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 28.0 3.16e-01 80.6% 57.9%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 26.0 3.37e-01 88.3% 81.1%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 27.0 3.20e-01 87.4% 68.7%
3zleA03 2.10.70.70 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.53 21.0 3.12e-01 74.8% 89.7%
6n8pA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 41.0 2.88e-01 84.5% 47.8%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.53 38.0 4.00e-01 74.8% 100.0%
1m61A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 29.0 2.92e-01 76.7% 51.9%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 26.0 2.89e-01 72.8% 57.8%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3586841 378.1.1.7 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NUMOD4,HNH_3 0.85 75.0 7.21e-01 92.2% 87.0%
3420881 5.1.3.252 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF27637 0.62 25.0 3.62e-01 84.5% 100.0%
3941391 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 27.0 3.38e-01 87.4% 66.7%
89916 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.58 49.0 4.17e-01 90.3% 68.5%
8233 378.1.1.6 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › zf-His_Me_endon 0.58 48.0 4.15e-01 90.3% 68.5%
4015071 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 31.0 3.65e-01 70.9% 75.7%
4547801 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 27.0 2.87e-01 88.3% 48.9%
4930470 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.55 30.0 3.27e-01 88.3% 62.4%
3633647 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.55 29.0 3.46e-01 86.4% 76.9%
3387119 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.55 31.0 3.30e-01 70.9% 62.2%
4087011 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 28.0 2.96e-01 90.3% 54.7%
3281271 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.52 31.0 3.32e-01 70.9% 68.9%
4011604 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.51 29.0 3.26e-01 70.9% 73.3%
D2 high residues 118-166
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5y27A00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.72 57.0 4.50e-01 85.7% 45.9%
3cm0A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 46.0 3.28e-01 85.7% 23.4%
2c9oB03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 46.0 4.04e-01 89.8% 97.6%
8be0A01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.60 51.0 3.49e-01 100.0% 81.2%
1olmC01 3.40.525.10 Alpha Beta › 3-Layer(aba) Sandwich › Phosphatidylinositol Transfer Protein Sec14p › CRAL-TRIO lipid binding domain 0.60 46.0 2.83e-01 81.6% 17.3%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3836893 148.1.1.12 ↗ alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP 0.71 58.0 4.86e-01 87.8% 55.0%
3802534 148.1.1.12 ↗ alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP 0.69 56.0 4.14e-01 89.8% 36.0%
3693961 148.1.1.12 ↗ alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP 0.67 58.0 4.97e-01 93.9% 62.7%
3596744 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.65 47.0 3.83e-01 75.5% 50.6%
3605504 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.60 48.0 3.09e-01 87.8% 18.8%