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MN695334.1__QGT54496.1__b3_0254__00238

Bact-Vir

MN695334.1__QGT54496.1__b3_0254__00238

Identity

Accession:
MN695334 ↗
Kingdom:
phage

Quality

96.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_B3

TaxID: 2674978

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-120
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08302.17 best tRNA_lig_CPD 33.8 3.50e-08 73.1% 20.8%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wojA00 3.90.1740.10 Alpha Beta › Alpha-Beta Complex › 2',3'-cyclic nucleotide 3'-phosphodiesterase fold › 2',3'-cyclic nucleotide 3'-phosphodiesterase superfamily 0.89 84.0 6.82e-01 100.0% 99.5%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 31.0 3.93e-01 93.3% 91.0%
2c9jA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.54 47.0 3.93e-01 97.5% 86.4%
2pslA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.53 46.0 3.81e-01 95.8% 81.6%
1h2cA00 2.70.20.20 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Matrix protein VP40, N-terminal domain 0.53 46.0 4.63e-01 100.0% 93.5%
4dkmA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.53 46.0 3.82e-01 96.6% 85.0%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 31.0 3.86e-01 96.6% 98.6%
6lofA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.52 42.0 3.89e-01 90.8% 85.2%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3744887 264.1.1.10 ↗ beta barrels › LigT-like › LigT-related › LigT-related › tRNA_lig_CPD 0.90 84.0 7.40e-01 98.3% 100.0%
3497100 264.1.1.0 ↗ beta barrels › LigT-like › LigT-related › LigT-related 0.89 84.0 6.47e-01 100.0% 98.8%
3480974 264.1.1.3 ↗ beta barrels › LigT-like › LigT-related › LigT-related › CNPase 0.89 84.0 6.51e-01 100.0% 100.0%
3871657 264.1.1.3 ↗ beta barrels › LigT-like › LigT-related › LigT-related › CNPase 0.89 85.0 6.51e-01 100.0% 88.7%
3709497 264.1.1.10 ↗ beta barrels › LigT-like › LigT-related › LigT-related › tRNA_lig_CPD 0.89 85.0 7.87e-01 100.0% 96.6%
3608079 264.1.1.10 ↗ beta barrels › LigT-like › LigT-related › LigT-related › tRNA_lig_CPD 0.89 85.0 7.92e-01 99.2% 99.3%
3182852 264.1.1.10 ↗ beta barrels › LigT-like › LigT-related › LigT-related › tRNA_lig_CPD 0.88 84.0 6.89e-01 100.0% 98.0%
3835887 264.1.1.10 ↗ beta barrels › LigT-like › LigT-related › LigT-related › tRNA_lig_CPD 0.88 82.0 7.49e-01 97.5% 100.0%
3673377 264.1.1.0 ↗ beta barrels › LigT-like › LigT-related › LigT-related 0.87 79.0 7.35e-01 95.8% 100.0%
3176561 264.1.1.10 ↗ beta barrels › LigT-like › LigT-related › LigT-related › tRNA_lig_CPD 0.86 80.0 6.59e-01 98.3% 99.5%
3594510 264.1.1.0 ↗ beta barrels › LigT-like › LigT-related › LigT-related 0.86 82.0 6.58e-01 100.0% 99.5%
3611297 264.1.1.0 ↗ beta barrels › LigT-like › LigT-related › LigT-related 0.86 81.0 7.56e-01 100.0% 97.9%
3606700 264.1.1.0 ↗ beta barrels › LigT-like › LigT-related › LigT-related 0.86 80.0 6.66e-01 99.2% 100.0%
3591493 264.1.1.0 ↗ beta barrels › LigT-like › LigT-related › LigT-related 0.81 76.0 7.09e-01 100.0% 97.9%
3203190 264.1.1.0 ↗ beta barrels › LigT-like › LigT-related › LigT-related 0.80 75.0 6.96e-01 100.0% 95.9%
3264230 264.1.1.0 ↗ beta barrels › LigT-like › LigT-related › LigT-related 0.79 75.0 7.19e-01 99.2% 100.0%
4965442 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.67 62.0 5.55e-01 100.0% 94.4%
3690734 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.66 60.0 5.38e-01 100.0% 91.5%
4960285 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.57 48.0 4.86e-01 100.0% 93.9%
4589827 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.54 49.0 4.86e-01 100.0% 94.4%
1281033 1.1.7.33 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF4438 0.54 38.0 3.43e-01 72.3% 98.1%
2458553 271.1.1.1 ↗ beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.52 43.0 4.08e-01 89.9% 99.3%
1157836 271.1.1.1 ↗ beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.52 43.0 3.99e-01 90.8% 85.9%