←Back to structures

MN695334.1__QGT54592.1__b3_0357__00334

Bact-Vir

MN695334.1__QGT54592.1__b3_0357__00334

Identity

Accession:
MN695334 ↗
Kingdom:
phage

Quality

90.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_B3

TaxID: 2674978

Cluster

View cluster (28 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-84
PDB
Domain cluster: rep: NC_031927.1__YP_009323018.1__BOW86_gp085__00085__D3-79
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01541.31 best GIY-YIG 35.0 2.00e-08 100.0% 71.8%
D2 medium residues 147-184
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3l2pA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.78 39.0 3.13e-01 73.7% 25.4%
2zo4A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 42.0 3.83e-01 78.9% 44.9%
1loxA01 1.20.245.10 Mainly Alpha › Up-down Bundle › Lipoxygenase-1; domain 5 › Lipoxygenase-1; Domain 5 0.62 47.0 2.75e-01 92.1% 38.1%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 42.0 2.95e-01 73.7% 38.6%
1ni7A00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.61 41.0 2.84e-01 71.1% 36.2%
1tzlA02 3.30.1920.50 Alpha Beta › 2-Layer Sandwich › Phage tail proteins - 2 layer sandwich fold › 0.61 38.0 3.22e-01 73.7% 33.9%
1u5tB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 41.0 3.36e-01 73.7% 39.1%
3floB00 1.10.3200.20 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › DNA Polymerase alpha, zinc finger 0.58 46.0 3.09e-01 100.0% 26.7%
3ol0B00 6.20.90.30 Special › Other non-globular › SH3 type barrels. › 0.58 38.0 3.80e-01 78.9% 63.4%
1p6rA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 41.0 3.15e-01 76.3% 40.2%
5t3dA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.55 44.0 2.95e-01 94.7% 79.4%
2f1rA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 41.0 2.80e-01 84.2% 93.2%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 45.0 3.24e-01 100.0% 52.8%
2y3mA02 3.30.1370.130 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.51 38.0 3.29e-01 100.0% 37.5%
3gmgA00 3.30.70.1880 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function DUF881 0.51 39.0 2.85e-01 100.0% 83.2%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3165249 241.7.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › YgaC/TfoX-N like › YgaC/TfoX-N like › TfoX_N 0.74 41.0 2.90e-01 100.0% 19.1%
3564508 221.1.1.116 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_6 0.65 39.0 2.74e-01 81.6% 20.0%
5044182 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 38.0 2.87e-01 73.7% 27.1%
5011380 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.62 51.0 3.11e-01 97.4% 19.8%
2697 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 41.0 3.29e-01 73.7% 35.1%
3805761 614.1.1.0 ↗ alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain 0.61 43.0 3.53e-01 100.0% 38.7%
5075184 2004.1.1.97 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.59 51.0 3.21e-01 100.0% 92.4%
3817957 7579.1.1.92 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1, Abhydrolase_6 0.59 45.0 2.80e-01 100.0% 33.1%
2496895 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 38.0 2.82e-01 71.1% 21.6%
5065439 2004.1.1.97 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.57 41.0 2.72e-01 76.3% 87.3%
5022231 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 46.0 3.20e-01 92.1% 36.8%
3590516 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.56 40.0 3.02e-01 78.9% 89.1%
4989979 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 41.0 3.02e-01 78.9% 52.4%
4033853 3012.1.1.0 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.53 40.0 2.92e-01 81.6% 69.0%
3610175 1189.1.1.0 ↗ alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor 0.52 44.0 2.51e-01 94.7% 90.2%
4947949 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 35.0 2.88e-01 78.9% 73.3%
5031117 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 34.0 2.68e-01 76.3% 38.1%