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MN695335.1__QGT54824.1__b23_0209__00196
Bact-VirMN695335.1__QGT54824.1__b23_0209__00196
Identity
- Accession:
- MN695335 ↗
- Kingdom:
- phage
Quality
92.6
mean pLDDT
Taxonomy
TaxID: 2674977
Cluster
View cluster (13 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-136
Domain cluster:
rep: CG10_big_fil_rev_8_21_14_0-10_scaffold_17_prodigal-single.1__X__X__00080__D4-138
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01743.27 best | PolyA_pol | 56.9 | 3.80e-15 | 98.5% | 89.7% |
D2
high
residues 140-231
Domain cluster:
rep: SR-VP_4-6_scaffold_141_4176636_prodigal-single.1__X__X__00164__D151-253
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12627.13 best | PolyA_pol_RNAbd | 23.2 | 6.40e-05 | 44.6% | 39.1% |
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1mivA02 | 1.10.110.30 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › | 0.88 | 74.0 | 7.31e-01 | 91.3% | 84.4% |
| 3aqlA02 | 1.10.3090.10 | Mainly Alpha › Orthogonal Bundle › cca-adding enzyme, domain 2 › cca-adding enzyme, domain 2 | 0.86 | 75.0 | 5.36e-01 | 96.7% | 34.7% |
| 3h37A02 | 1.10.110.30 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › | 0.85 | 75.0 | 7.73e-01 | 96.7% | 100.0% |
| 4x4wA02 | 1.10.3090.10 | Mainly Alpha › Orthogonal Bundle › cca-adding enzyme, domain 2 › cca-adding enzyme, domain 2 | 0.85 | 77.0 | 5.80e-01 | 96.7% | 44.3% |
| 3h38A02 | 1.10.3090.10 | Mainly Alpha › Orthogonal Bundle › cca-adding enzyme, domain 2 › cca-adding enzyme, domain 2 | 0.84 | 74.0 | 5.24e-01 | 98.9% | 33.2% |
| 4wbyA02 | 1.10.3090.10 | Mainly Alpha › Orthogonal Bundle › cca-adding enzyme, domain 2 › cca-adding enzyme, domain 2 | 0.82 | 73.0 | 5.31e-01 | 98.9% | 37.3% |
| 3woyA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.62 | 53.0 | 3.89e-01 | 94.6% | 42.3% |
| 4evfA01 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.60 | 41.0 | 4.58e-01 | 75.0% | 93.0% |
| 4evfA02 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.60 | 43.0 | 4.67e-01 | 78.3% | 93.2% |
| 2yvyA01 | 1.25.60.10 | Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like | 0.59 | 48.0 | 4.37e-01 | 100.0% | 65.6% |
| 3pvtA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.59 | 49.0 | 3.53e-01 | 95.7% | 65.5% |
| 4r30A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.58 | 45.0 | 3.71e-01 | 84.8% | 81.0% |
| 2yv9B02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.58 | 44.0 | 4.00e-01 | 83.7% | 80.6% |
| 5cl3A00 | 1.25.10.90 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › | 0.57 | 48.0 | 3.71e-01 | 100.0% | 38.5% |
| 3lxzB02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.57 | 43.0 | 3.90e-01 | 84.8% | 74.6% |
| 4by6D02 | 1.25.40.800 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.56 | 46.0 | 3.62e-01 | 96.7% | 57.3% |
| 4kkiA01 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.55 | 48.0 | 3.46e-01 | 100.0% | 37.3% |
| 6vxcA01 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.55 | 47.0 | 2.81e-01 | 100.0% | 19.4% |
| 2xqyA02 | 1.20.58.1340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 44.0 | 3.90e-01 | 91.3% | 99.3% |
| 6j0pA01 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.53 | 44.0 | 3.35e-01 | 96.7% | 61.0% |
| 3fr3B02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.52 | 42.0 | 4.03e-01 | 93.5% | 93.0% |
| 1bucA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.52 | 38.0 | 3.52e-01 | 78.3% | 92.7% |
| 3kegA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.52 | 45.0 | 3.62e-01 | 100.0% | 67.7% |
| 1iyhB02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.52 | 42.0 | 4.01e-01 | 91.3% | 93.5% |
| 1mldA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 43.0 | 3.78e-01 | 95.7% | 76.6% |
| 3f4mA00 | 1.20.1440.160 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like | 0.51 | 37.0 | 3.15e-01 | 77.2% | 94.8% |
| 3nf4A01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.51 | 37.0 | 3.48e-01 | 78.3% | 76.5% |
| 2lf3A00 | 1.20.1280.220 | Mainly Alpha › Up-down Bundle › Monooxygenase › Effector protein HopAB, BAK1-interacting domain | 0.50 | 32.0 | 3.07e-01 | 88.0% | 55.2% |
| 7sf7A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.50 | 43.0 | 3.12e-01 | 95.7% | 74.2% |
ECOD (54)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3195511 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.91 | 84.0 | 5.52e-01 | 96.7% | 27.0% |
| 4944307 | 131.2.1.0 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like | 0.91 | 79.0 | 5.40e-01 | 95.7% | 30.0% |
| 3741993 | 131.2.1.0 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like | 0.90 | 82.0 | 5.42e-01 | 95.7% | 27.5% |
| 3637478 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.90 | 85.0 | 5.53e-01 | 98.9% | 27.2% |
| 3454663 | 131.2.1.0 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like | 0.90 | 84.0 | 5.45e-01 | 98.9% | 25.7% |
| 4167114 | 131.2.1.0 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like | 0.90 | 82.0 | 5.34e-01 | 95.7% | 29.9% |
| 4800 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.90 | 80.0 | 5.53e-01 | 96.7% | 32.5% |
| 3722642 | 131.2.1.0 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like | 0.89 | 82.0 | 5.48e-01 | 96.7% | 29.2% |
| 3788681 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.89 | 83.0 | 5.35e-01 | 97.8% | 25.4% |
| 3173464 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.89 | 83.0 | 5.42e-01 | 98.9% | 26.4% |
| 3253089 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.89 | 81.0 | 5.37e-01 | 96.7% | 27.4% |
| 4044665 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.89 | 78.0 | 5.45e-01 | 95.7% | 33.3% |
| 3950512 | 131.2.1.1 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › HD,PolyA_pol_RNAbd | 0.89 | 79.0 | 5.27e-01 | 97.8% | 27.6% |
| 4411977 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.88 | 77.0 | 5.44e-01 | 95.7% | 33.3% |
| 3447473 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.88 | 78.0 | 5.25e-01 | 96.7% | 28.7% |
| 3741740 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.88 | 78.0 | 5.23e-01 | 93.5% | 28.3% |
| 4275218 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.88 | 77.0 | 5.45e-01 | 95.7% | 34.0% |
| 4037315 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.88 | 77.0 | 5.42e-01 | 95.7% | 33.3% |
| 3839665 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.88 | 74.0 | 5.29e-01 | 94.6% | 33.5% |
| 4146848 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.88 | 77.0 | 5.42e-01 | 95.7% | 34.0% |
| 3502691 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.88 | 78.0 | 5.48e-01 | 97.8% | 33.5% |
| 3429759 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.87 | 78.0 | 5.27e-01 | 97.8% | 29.5% |
| 3352880 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.87 | 76.0 | 5.42e-01 | 95.7% | 34.7% |
| 4090696 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.87 | 75.0 | 5.17e-01 | 96.7% | 30.0% |
| 4134287 | 131.2.1.2 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_arg_C,PolyA_pol_RNAbd | 0.86 | 76.0 | 5.35e-01 | 96.7% | 33.7% |
| 2801534 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.86 | 78.0 | 5.58e-01 | 96.7% | 36.8% |
| 4033097 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.86 | 79.0 | 5.51e-01 | 97.8% | 34.2% |
| 4582450 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.86 | 76.0 | 5.25e-01 | 97.8% | 31.6% |
| 1143835 | 131.2.1.1 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › HD,PolyA_pol_RNAbd | 0.85 | 74.0 | 5.16e-01 | 97.8% | 31.6% |
| 4028563 | 131.2.1.0 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like | 0.85 | 78.0 | 5.19e-01 | 97.8% | 28.3% |
| 4196298 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.84 | 77.0 | 5.41e-01 | 98.9% | 34.9% |
| 4583076 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.84 | 74.0 | 5.29e-01 | 94.6% | 35.1% |
| 3218943 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.84 | 75.0 | 5.29e-01 | 95.7% | 33.8% |
| 3387528 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.84 | 70.0 | 5.20e-01 | 96.7% | 37.3% |
| 3965663 | 131.2.1.2 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_arg_C,PolyA_pol_RNAbd | 0.83 | 74.0 | 5.24e-01 | 96.7% | 33.8% |
| 4511032 | 131.2.1.1 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › HD,PolyA_pol_RNAbd | 0.83 | 73.0 | 4.94e-01 | 93.5% | 28.7% |
| 2387767 | 131.2.1.0 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like | 0.81 | 70.0 | 5.11e-01 | 96.7% | 35.8% |
| 4456310 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.81 | 72.0 | 4.99e-01 | 95.7% | 31.6% |
| 4048296 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.81 | 71.0 | 5.10e-01 | 95.7% | 35.5% |
| 4428969 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.80 | 71.0 | 4.94e-01 | 95.7% | 31.6% |
| 4316774 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.80 | 71.0 | 4.90e-01 | 95.7% | 31.1% |
| 4625727 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.80 | 70.0 | 5.02e-01 | 95.7% | 34.8% |
| 4253012 | 131.2.1.5 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › HD, PF27444 | 0.80 | 69.0 | 4.86e-01 | 95.7% | 31.9% |
| 4374398 | 109.4.1.423 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PP4R3 | 0.64 | 56.0 | 3.71e-01 | 100.0% | 30.1% |
| 3765005 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 54.0 | 3.28e-01 | 100.0% | 18.5% |
| 3872522 | 109.4.1.567 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Mesothelin | 0.61 | 48.0 | 3.03e-01 | 98.9% | 15.8% |
| 3271766 | 109.4.1.423 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PP4R3 | 0.60 | 52.0 | 3.28e-01 | 100.0% | 22.6% |
| 4976398 | 622.1.1.0 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain | 0.60 | 46.0 | 4.48e-01 | 84.8% | 88.3% |
| 3925919 | 109.4.1.828 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Htt_C-HEAT | 0.58 | 50.0 | 2.75e-01 | 98.9% | 6.8% |
| 4169813 | 185.1.1.5 ↗ | alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Gliadin | 0.58 | 43.0 | 4.14e-01 | 81.5% | 80.9% |
| 3979848 | 1075.1.1.22 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › MlaE | 0.55 | 40.0 | 3.07e-01 | 77.2% | 65.2% |
| 3596966 | 109.1.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C | 0.53 | 44.0 | 3.45e-01 | 95.7% | 54.5% |
| 3831040 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.52 | 45.0 | 3.67e-01 | 100.0% | 67.9% |
| 4610814 | 185.1.1.1 ↗ | alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Tryp_alpha_amyl | 0.52 | 39.0 | 3.73e-01 | 84.8% | 87.8% |