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MN695335.1__QGT54872.1__b23_0258__00244

Bact-Vir

MN695335.1__QGT54872.1__b23_0258__00244

Identity

Accession:
MN695335 ↗
Kingdom:
phage

Quality

88.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_B23

TaxID: 2674977

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-143
PDB
Domain cluster: rep: IMGVR_UViG_3300044580_000147-3300044580-Ga0485776_0002898_8584_9516__D106-198
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1v0fB03 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.69 48.0 5.59e-01 92.5% 100.0%
2v31A01 2.40.30.180 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Ubiquitin-activating enzyme E1, FCCH domain 0.68 48.0 5.26e-01 98.3% 89.7%
2ztnA02 2.40.30.190 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.67 57.0 5.44e-01 90.8% 85.8%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.61 40.0 4.74e-01 88.3% 100.0%
1sq4A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 41.0 4.07e-01 99.2% 70.6%
2i45D00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 43.0 4.65e-01 99.2% 99.0%
2oa2A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 40.0 4.04e-01 94.2% 75.2%
4n0rA03 2.60.40.3950 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 45.0 4.68e-01 98.3% 98.2%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 42.0 4.55e-01 98.3% 99.0%
3h7jA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 39.0 4.04e-01 95.8% 81.6%
6bs6B01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 29.0 3.26e-01 99.2% 66.3%
4qmaA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 40.0 3.84e-01 94.2% 69.2%
3h7jA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 40.0 4.13e-01 97.5% 88.2%
3gzaB02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 39.0 4.22e-01 97.5% 99.0%
3mcaA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 35.0 3.79e-01 77.5% 82.4%
5c5uB00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.51 45.0 3.86e-01 97.5% 77.9%
7zscA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.51 45.0 3.67e-01 97.5% 59.7%
5by5A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 42.0 4.35e-01 99.2% 94.8%
1nxmA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 35.0 3.02e-01 90.0% 44.3%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3488003 1.1.7.35 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › E1_FCCH 0.69 47.0 5.52e-01 95.8% 98.8%
4085589 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.66 43.0 5.14e-01 90.8% 98.8%
3842233 1.1.7.69 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel 0.63 45.0 5.13e-01 97.5% 98.9%
3975044 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.63 39.0 4.79e-01 98.3% 100.0%
5012252 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 40.0 4.21e-01 91.7% 82.7%
3415428 1.1.7.69 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel 0.55 45.0 4.77e-01 100.0% 100.0%
3502695 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.53 21.0 2.89e-01 75.8% 74.0%
3273490 1.1.7.46 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B 0.52 45.0 4.53e-01 98.3% 92.5%
3968621 10.32.1.280 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF3999 0.52 38.0 3.82e-01 100.0% 75.8%
3811435 376.1.2.16 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT 0.51 26.0 3.23e-01 73.3% 84.6%
3833660 377.1.1.47 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › C1-like_CT 0.51 27.0 3.40e-01 74.2% 92.3%
3356021 10.1.1.8 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.51 44.0 3.47e-01 97.5% 84.5%
1393 11.1.1.122 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GO-like_E_set 0.50 36.0 3.79e-01 100.0% 86.3%
1562396 11.1.1.122 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GO-like_E_set 0.50 36.0 3.88e-01 100.0% 90.9%
D2 high residues 150-270
PDB
Domain cluster: rep: MT724048.1__QMP81551.1__SAP3_42__00042__D317-458
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1o67C00 2.40.33.20 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.63 46.0 3.81e-01 76.0% 86.2%
3op1A02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.58 42.0 4.34e-01 74.4% 100.0%
4dqlB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 41.0 4.28e-01 74.4% 98.2%
1ddgA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 41.0 4.26e-01 76.0% 94.7%
5gxuB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 40.0 4.08e-01 75.2% 93.4%
3bnwB00 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.55 40.0 3.70e-01 76.0% 80.3%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3506820 1.1.7.50 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 0.71 49.0 4.77e-01 71.1% 83.0%
4890345 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.71 48.0 5.68e-01 92.6% 100.0%
None — 0.65 51.0 3.66e-01 83.5% 83.8%
3981045 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.58 41.0 3.76e-01 72.7% 75.5%
3387846 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.58 42.0 4.26e-01 76.0% 100.0%
3592708 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 41.0 3.75e-01 74.4% 90.6%
3703044 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.56 41.0 3.76e-01 76.9% 83.0%
3929255 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.54 40.0 3.79e-01 76.0% 86.2%
5069776 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 38.0 3.96e-01 74.4% 91.3%
5070852 1.1.8.25 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › ARPP-1 0.52 42.0 4.43e-01 89.3% 100.0%
D3 high residues 678-754
PDB
Domain cluster: rep: HQ633071.1__AGH31670.1__SWZG_00163__00157__D284-355
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.67 45.0 4.46e-01 70.1% 67.1%
2ya0A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 41.0 3.47e-01 72.7% 43.8%
3aqgB00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.56 33.0 2.79e-01 71.4% 31.2%
5ikuA01 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.54 35.0 3.19e-01 98.7% 48.1%
4xcmA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.53 37.0 3.17e-01 93.5% 44.7%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3965887 11.1.1.457 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › FixH 0.61 40.0 3.67e-01 70.1% 50.5%
1220968 11.1.1.47 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_48 0.59 41.0 3.45e-01 72.7% 42.1%
3832908 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 38.0 3.01e-01 100.0% 35.9%
D4 high residues 808-893
PDB
Domain cluster: rep: KJ019128.1__AIX38078.1__Syn7803US88_77__00077__D502-594
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8ehtB01 2.60.40.1090 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain 0.62 53.0 4.55e-01 98.8% 98.6%
2vm9A02 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 52.0 5.08e-01 100.0% 88.8%
3hrdC02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.60 42.0 3.84e-01 72.1% 100.0%
8owfA01 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 51.0 4.79e-01 97.7% 89.2%
2dm7A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 43.0 4.35e-01 98.8% 79.5%
5c86A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 49.0 4.69e-01 100.0% 82.2%
2ep6A01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.57 43.0 3.93e-01 91.9% 58.2%
5a2fA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 50.0 4.65e-01 100.0% 80.4%
1tulA00 2.70.40.20 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Baculovirus telokin-like protein 20 0.57 49.0 4.66e-01 100.0% 92.2%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 43.0 4.50e-01 98.8% 96.0%
1vmoA00 2.100.10.20 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Vitelline membrane outer layer protein I (VOMI) 0.55 35.0 2.98e-01 73.3% 33.7%
3vskA01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.55 40.0 3.45e-01 75.6% 96.2%
1alyA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.55 46.0 4.04e-01 100.0% 93.8%
1pqzA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 47.0 4.54e-01 100.0% 85.1%
2df7A02 2.60.120.660 Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus 0.54 46.0 4.00e-01 100.0% 75.7%
3eliA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 42.0 3.66e-01 88.4% 99.3%
1kxgA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 3.93e-01 100.0% 72.2%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 27.0 3.04e-01 80.2% 62.1%
8p97A01 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.52 39.0 2.42e-01 82.6% 95.9%
2c9aA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.71e-01 100.0% 96.9%
6jwfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 44.0 2.97e-01 100.0% 50.3%
2hevF00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.50 43.0 3.86e-01 100.0% 92.9%
1opoA02 2.60.40.1780 Mainly Beta › Sandwich › Immunoglobulin-like › Carmovirus coat protein 0.50 42.0 4.06e-01 97.7% 84.5%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5082810 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 52.0 4.71e-01 100.0% 84.8%
5043304 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 52.0 4.73e-01 100.0% 98.3%
151167 10.3.1.1 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.59 50.0 4.29e-01 100.0% 94.2%
5037264 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 43.0 4.46e-01 80.2% 86.3%
4340167 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 50.0 4.14e-01 98.8% 96.9%
5050550 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 49.0 4.45e-01 97.7% 100.0%
3893939 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 50.0 4.52e-01 100.0% 84.2%
1714453 11.21.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › TSP_Ig-like 0.57 50.0 4.88e-01 100.0% 96.8%
4426314 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 49.0 4.20e-01 98.8% 71.0%
3583804 11.1.5.94 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Gpi16 0.57 48.0 3.94e-01 100.0% 48.9%
5033327 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 43.0 4.38e-01 100.0% 85.9%
3272448 11.21.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.56 48.0 4.67e-01 100.0% 88.4%
3595057 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 43.0 3.46e-01 90.7% 58.3%
5002621 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 45.0 3.29e-01 100.0% 80.8%
3608429 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 42.0 3.41e-01 90.7% 47.2%
5012404 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 44.0 3.93e-01 97.7% 76.2%
3501933 11.1.1.14 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.52 45.0 4.25e-01 98.8% 89.5%
4824506 809.1.1.1 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › SmpA_OmlA 0.52 36.0 3.36e-01 74.4% 67.5%
3896490 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 42.0 3.30e-01 97.7% 85.0%
5006669 244.4.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit 0.51 39.0 3.60e-01 81.4% 65.5%
4917097 10.1.1.79 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › RYDR_Jsol 0.50 42.0 3.16e-01 100.0% 59.4%
5049075 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.50 35.0 2.83e-01 73.3% 95.6%
D5 high residues 907-1068
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2crvA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.66 37.0 4.80e-01 84.0% 96.8%
3ne5C02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.64 39.0 4.69e-01 84.6% 93.1%
2qf4A01 2.40.10.340 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 1 0.62 31.0 4.17e-01 86.4% 94.9%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.60 36.0 4.03e-01 76.5% 76.6%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 32.0 3.40e-01 96.3% 57.1%
1bdfA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.56 34.0 4.11e-01 99.4% 91.5%
7k0xA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 26.0 3.55e-01 79.6% 87.2%
6a2bA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 28.0 3.59e-01 80.9% 87.6%
3jqwC00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.52 31.0 3.55e-01 85.2% 78.5%
3besR02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 31.0 3.61e-01 83.3% 84.7%
4dkaC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 25.0 3.47e-01 93.2% 90.7%
1tz0B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 26.0 3.23e-01 87.0% 78.4%
2f91A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 30.0 3.55e-01 75.9% 84.1%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3981111 1.1.7.89 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 0.64 42.0 4.34e-01 100.0% 69.0%
4062509 1.1.7.91 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 0.63 39.0 4.74e-01 100.0% 95.2%
4372074 1.1.7.89 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 0.63 41.0 4.39e-01 100.0% 75.0%
3973696 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 41.0 4.54e-01 100.0% 84.0%
3973282 1.1.7.89 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 0.62 41.0 4.82e-01 84.6% 97.3%
3967199 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 40.0 4.71e-01 84.0% 97.1%
4407090 1.1.7.89 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 0.62 42.0 4.38e-01 100.0% 75.2%
3169767 1.1.7.49 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ski7_2nd 0.60 43.0 4.61e-01 100.0% 85.0%
5007131 1.1.7.28 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.59 35.0 4.41e-01 84.0% 98.9%
3207682 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 41.0 4.38e-01 100.0% 80.7%
4640974 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.59 36.0 4.08e-01 76.5% 80.0%
2407461 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.59 36.0 3.96e-01 77.2% 74.8%
164720 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.59 32.0 3.40e-01 96.3% 57.1%
5080510 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.58 31.0 3.94e-01 78.4% 87.4%
3784272 1.1.7.102 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF28793 0.58 40.0 4.59e-01 82.1% 96.7%
3943282 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.58 35.0 3.99e-01 75.9% 80.0%
4189243 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.57 36.0 3.93e-01 77.2% 76.2%
3723475 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 39.0 4.35e-01 95.7% 89.2%
3609057 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 42.0 4.41e-01 84.6% 86.9%
4287081 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.55 36.0 3.98e-01 77.2% 83.2%
3504078 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.54 31.0 2.66e-01 71.6% 33.8%
3587074 1.1.13.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_N 0.54 33.0 3.85e-01 93.8% 88.2%
3880678 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 39.0 4.30e-01 84.6% 100.0%
3716709 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 30.0 3.47e-01 95.1% 78.9%
D6 medium residues 272-385_557-573
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4igbB02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 44.0 4.30e-01 92.4% 63.6%
1wzaA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.64 31.0 3.85e-01 86.3% 73.4%
3pucA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 40.0 4.55e-01 94.7% 84.7%
5ikuA01 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.63 36.0 3.99e-01 90.8% 69.2%
2dm7A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 37.0 4.32e-01 89.3% 85.2%
3ndzE00 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 37.0 4.07e-01 100.0% 72.0%
3qdhA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 44.0 4.17e-01 98.5% 61.5%
3fanA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 31.0 3.87e-01 80.2% 83.6%
2rikA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 37.0 4.24e-01 88.5% 83.2%
4ac9C04 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.60 35.0 4.28e-01 97.7% 93.8%
2k1mA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 36.0 4.12e-01 88.5% 81.1%
2j8hA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 38.0 4.28e-01 86.3% 84.7%
2cqvA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 38.0 4.08e-01 93.1% 73.7%
5uv6A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 36.0 4.15e-01 86.3% 86.5%
2a38A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 37.0 4.23e-01 93.9% 85.4%
4uzgA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 46.0 4.40e-01 92.4% 69.9%
3lcyA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 37.0 4.13e-01 86.3% 83.5%
4p0dA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 42.0 3.85e-01 92.4% 57.1%
2xy1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 37.0 4.18e-01 85.5% 86.6%
7y9aA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 35.0 4.07e-01 84.0% 88.5%
3kewA01 2.40.30.130 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.56 34.0 4.12e-01 89.3% 94.0%
2f68X01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 36.0 3.59e-01 92.4% 61.6%
3skvA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 37.0 3.56e-01 93.9% 57.1%
2e6qA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 38.0 4.08e-01 96.2% 83.0%
2y23A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 32.0 3.51e-01 82.4% 70.2%
3ejjX03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 34.0 3.88e-01 86.3% 86.3%
1ah1A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 38.0 3.92e-01 85.5% 74.4%
2petA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.91e-01 87.0% 82.8%
8begA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 45.0 4.23e-01 99.2% 77.6%
2cwrA00 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 35.0 3.89e-01 89.3% 94.8%
4e8dA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 35.0 3.46e-01 100.0% 67.4%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3280299 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.67 35.0 4.26e-01 87.0% 80.0%
3399519 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.64 38.0 3.91e-01 82.4% 59.2%
3767145 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.63 39.0 4.16e-01 98.5% 70.9%
3589023 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.62 41.0 4.06e-01 91.6% 63.7%
4000993 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.61 40.0 4.10e-01 88.5% 68.8%
3892135 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 41.0 4.41e-01 87.8% 81.8%
3273353 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.60 35.0 4.12e-01 85.5% 85.9%
5018861 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 40.0 4.41e-01 85.5% 84.8%
4937058 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 40.0 4.37e-01 87.8% 84.8%
5036479 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.59 37.0 4.00e-01 88.5% 74.5%
5007537 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 32.0 3.65e-01 98.5% 71.6%
4265094 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.57 35.0 3.98e-01 90.1% 82.1%
3945936 11.1.1.59 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CagX 0.57 33.0 3.29e-01 98.5% 51.9%
4402932 12.2.1.1 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › Lyase_8_C 0.57 34.0 3.48e-01 89.3% 60.0%
3572285 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.57 38.0 4.18e-01 92.4% 85.7%
4519252 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.56 36.0 3.87e-01 84.7% 73.9%
4927492 304.51.1.11 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas6b_N 0.56 35.0 3.96e-01 75.6% 84.2%
4322439 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.56 34.0 3.71e-01 89.3% 71.8%
4959168 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 33.0 4.02e-01 88.5% 95.0%
3483841 1.1.7.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.55 35.0 3.84e-01 100.0% 79.6%
3578512 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.55 36.0 4.05e-01 90.1% 87.0%
5036581 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.55 35.0 3.85e-01 90.8% 81.0%
4116672 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.55 37.0 3.67e-01 90.8% 65.2%
4948192 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 35.0 3.78e-01 85.5% 75.5%
5068038 11.1.1.249 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_9 0.55 35.0 3.94e-01 95.4% 85.0%
3945996 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 33.0 4.00e-01 88.5% 94.1%
4970805 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 34.0 3.93e-01 90.1% 94.1%
3565984 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 36.0 3.03e-01 87.8% 38.7%
5069645 613.1.1.1 ↗ alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › tRNA-synt_2c 0.53 33.0 2.45e-01 87.8% 23.3%
5074512 3715.1.1.0 ↗ a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e 0.50 28.0 3.13e-01 77.1% 69.0%
3504271 10.32.1.73 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › BetaGal_ABD_1 0.50 33.0 3.33e-01 100.0% 64.4%
D7 medium residues 386-556
PDB
Domain cluster: rep: OR032571.1__WJZ48193.1__X__00003__D424-594
D8 medium residues 574-666
PDB
Domain cluster: rep: NC_020865.1__YP_007676328.1__CYZG_00006__00006__D1052-1126
D9 medium residues 758-802_894-906
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dlbA00 3.10.20.330 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function YopT 0.57 40.0 3.87e-01 77.6% 81.4%
3f7pD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 3.79e-01 98.3% 59.3%
3f4lA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 39.0 2.67e-01 82.8% 85.7%
3ieyB00 3.40.1350.150 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.51 42.0 3.20e-01 96.6% 44.7%
4griA02 3.90.800.10 Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3 0.51 37.0 3.05e-01 82.8% 80.5%
6bx7A02 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.50 40.0 3.41e-01 96.6% 55.5%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3263966 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 39.0 3.29e-01 77.6% 66.7%
3455390 207.1.1.55 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 0.50 37.0 2.23e-01 81.0% 42.9%