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MN698241.1__QGZ17790.1__HTVC027P_gp09__00009

Bact-Vir

MN698241.1__QGZ17790.1__HTVC027P_gp09__00009

Identity

Accession:
MN698241 ↗
Kingdom:
phage

Quality

83.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pelagibacter_phage_HTVC027P

TaxID: 2686457

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-58
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.76 52.0 4.75e-01 92.5% 55.1%
6w0pA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.75 46.0 2.66e-01 75.5% 7.4%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.70 55.0 3.99e-01 86.8% 33.1%
3kksB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.69 58.0 4.10e-01 90.6% 80.9%
1mpgA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.69 56.0 4.56e-01 96.2% 68.8%
7ue1B01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.68 54.0 3.92e-01 86.8% 85.4%
1i99I02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.68 58.0 4.58e-01 100.0% 46.2%
4paaA03 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.66 50.0 3.47e-01 84.9% 24.3%
7vljA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.65 56.0 4.76e-01 100.0% 63.4%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 48.0 4.39e-01 100.0% 59.2%
1gpqB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.63 51.0 4.05e-01 98.1% 66.4%
3nm6B00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.63 46.0 3.17e-01 86.8% 20.5%
3dpuB03 3.30.310.200 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.62 51.0 4.14e-01 96.2% 49.1%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.62 46.0 3.57e-01 84.9% 64.1%
1skoB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.60 49.0 3.97e-01 98.1% 94.8%
4on1A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.60 49.0 3.65e-01 92.5% 44.6%
2hhiA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.60 41.0 3.14e-01 71.7% 39.0%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.59 47.0 3.97e-01 100.0% 50.5%
4huzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 47.0 3.50e-01 94.3% 71.5%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.58 46.0 3.45e-01 90.6% 77.6%
1gkuB05 3.40.50.140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 44.0 3.50e-01 86.8% 40.5%
4ok4A02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 43.0 2.65e-01 84.9% 13.6%
3l4rA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 46.0 3.47e-01 100.0% 35.8%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 43.0 3.28e-01 94.3% 34.4%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 47.0 3.73e-01 100.0% 77.7%
6ywnA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.56 44.0 3.74e-01 100.0% 77.8%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 42.0 2.72e-01 84.9% 46.2%
3hj4A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.55 47.0 3.64e-01 100.0% 56.5%
3nybA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.54 43.0 3.59e-01 98.1% 82.7%
6fezA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 42.0 3.73e-01 98.1% 98.9%
1gm5A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 44.0 3.57e-01 92.5% 59.8%
1vybA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.53 44.0 2.97e-01 100.0% 21.6%
3s6gA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 43.0 3.34e-01 100.0% 82.9%
3mbhA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 44.0 2.74e-01 92.5% 38.4%
2r5vA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 44.0 3.30e-01 100.0% 71.3%
7essA01 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.52 42.0 3.31e-01 98.1% 92.4%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 37.0 2.86e-01 83.0% 59.2%
4lqzA00 2.40.128.570 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4909 0.52 42.0 3.32e-01 98.1% 67.2%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 37.0 3.00e-01 77.4% 91.9%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.51 44.0 3.61e-01 100.0% 93.3%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 41.0 3.62e-01 100.0% 90.1%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 42.0 2.54e-01 100.0% 67.1%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 38.0 3.63e-01 84.9% 83.3%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5003276 331.1.1.5 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N 0.77 53.0 5.03e-01 94.3% 60.0%
3645540 219.1.1.16 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 0.76 62.0 3.92e-01 100.0% 18.5%
3667795 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.72 64.0 4.61e-01 100.0% 46.7%
3937850 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.72 58.0 3.96e-01 86.8% 72.9%
3350473 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.71 61.0 5.65e-01 100.0% 81.4%
3253903 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.70 51.0 3.41e-01 79.2% 100.0%
1945733 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.70 56.0 3.90e-01 86.8% 76.4%
2575628 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.70 56.0 3.95e-01 86.8% 74.5%
3935131 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.69 59.0 4.08e-01 92.5% 78.2%
3925663 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.68 58.0 3.92e-01 92.5% 70.9%
5053495 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 48.0 3.51e-01 83.0% 26.2%
4150748 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.66 57.0 3.96e-01 92.5% 77.5%
3926267 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.66 53.0 3.65e-01 84.9% 91.9%
4339297 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 59.0 3.93e-01 100.0% 67.2%
3924148 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.65 55.0 3.81e-01 92.5% 73.9%
5044629 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 40.0 3.20e-01 73.6% 28.7%
3062973 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.64 53.0 3.35e-01 100.0% 16.5%
3937782 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.64 54.0 3.77e-01 92.5% 70.3%
4983425 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.61 46.0 2.76e-01 88.7% 13.4%
3218939 207.1.1.52 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.60 49.0 3.14e-01 94.3% 17.9%
3239098 5.1.1.7 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › PF27563 0.60 53.0 3.82e-01 98.1% 71.0%
5072371 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 44.0 3.69e-01 83.0% 98.0%
4948242 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 46.0 3.38e-01 86.8% 100.0%
4947581 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 37.0 3.07e-01 83.0% 31.8%
5018514 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 46.0 3.58e-01 96.2% 94.8%
3460911 316.1.1.36 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.56 46.0 3.26e-01 100.0% 37.4%
5045959 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 38.0 3.18e-01 79.2% 98.2%
3673032 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 43.0 4.03e-01 96.2% 90.0%
5074455 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 42.0 3.48e-01 98.1% 72.7%
4938191 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 41.0 3.53e-01 100.0% 86.4%
5005288 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 42.0 3.06e-01 92.5% 44.5%
3882038 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.51 46.0 3.26e-01 100.0% 40.0%
4093535 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 45.0 3.37e-01 100.0% 68.5%
4017732 220.1.1.202 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_N 0.51 42.0 3.20e-01 100.0% 64.7%
4983641 2484.1.1.49 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N 0.51 45.0 3.22e-01 98.1% 93.3%
3576957 221.13.1.0 ↗ a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.51 42.0 3.18e-01 98.1% 56.4%
3998167 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.50 42.0 2.71e-01 94.3% 38.0%