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MN698242.1__QGZ17884.1__HTVC103P_gp16__00016
Bact-VirMN698242.1__QGZ17884.1__HTVC103P_gp16__00016
Identity
- Accession:
- MN698242 ↗
- Kingdom:
- phage
Quality
92.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-58
Domain cluster:
rep: MN698244.1__QGZ18075.1__HTVC106P_gp32__00032__D2-48
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3egrA00 | 3.10.20.520 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B | 0.70 | 56.0 | 5.49e-01 | 94.5% | 87.3% |
| 3lp8A04 | 3.90.600.10 | Alpha Beta › Alpha-Beta Complex › Glycinamide Ribonucleotide Synthetase; Chain A, domain 4 › Phosphoribosylglycinamide synthetase, C-terminal domain | 0.69 | 52.0 | 4.41e-01 | 81.8% | 95.7% |
| 2lvhA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.67 | 45.0 | 4.90e-01 | 85.5% | 86.7% |
| 2ebeA00 | 3.30.70.2290 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF3208) | 0.62 | 45.0 | 3.75e-01 | 81.8% | 89.6% |
| 6rpxA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 49.0 | 4.26e-01 | 90.9% | 57.6% |
| 2llzA01 | 3.30.70.2360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 50.0 | 4.41e-01 | 98.2% | 96.7% |
| 1bquA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 49.0 | 3.97e-01 | 90.9% | 50.0% |
| 2yuwA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 46.0 | 3.89e-01 | 90.9% | 52.0% |
| 3tqtA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.58 | 41.0 | 3.92e-01 | 85.5% | 63.2% |
| 2g9oA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 46.0 | 4.20e-01 | 90.9% | 94.8% |
| 2nytD00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.57 | 47.0 | 3.44e-01 | 100.0% | 68.7% |
| 2ckaA01 | 3.40.5.120 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.57 | 39.0 | 4.13e-01 | 80.0% | 83.7% |
| 6hyfA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 44.0 | 3.66e-01 | 90.9% | 48.1% |
| 2qh7B01 | 3.40.5.90 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › CDGSH iron-sulfur domain, mitoNEET-type | 0.55 | 33.0 | 3.54e-01 | 83.6% | 70.2% |
| 1m4kA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 44.0 | 3.76e-01 | 96.4% | 53.1% |
| 5aq0B00 | 2.60.40.1120 | Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain | 0.54 | 36.0 | 3.30e-01 | 90.9% | 48.8% |
| 4fmrB01 | 2.70.50.70 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › | 0.54 | 41.0 | 3.20e-01 | 92.7% | 47.0% |
| 3w5mA04 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 37.0 | 2.99e-01 | 81.8% | 35.0% |
| 4hfqA02 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.53 | 45.0 | 3.43e-01 | 100.0% | 77.0% |
| 2wadA02 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.52 | 42.0 | 3.25e-01 | 98.2% | 54.7% |
| 6l4lA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.52 | 41.0 | 3.44e-01 | 96.4% | 57.8% |
| 2aehA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 42.0 | 3.69e-01 | 98.2% | 89.6% |
| 2e26A01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 38.0 | 2.76e-01 | 89.1% | 35.4% |
| 3lqmA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 39.0 | 3.42e-01 | 92.7% | 50.0% |
| 2eobA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.51 | 35.0 | 2.90e-01 | 72.7% | 61.1% |
| 2je8A01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 39.0 | 2.66e-01 | 81.8% | 30.2% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4964337 | 3115.5.1.1 ↗ | a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB | 0.73 | 60.0 | 6.01e-01 | 94.5% | 96.4% |
| 4962335 | 3115.5.1.1 ↗ | a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB | 0.69 | 57.0 | 5.46e-01 | 94.5% | 83.1% |
| 4531584 | 4012.1.1.0 ↗ | a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase | 0.63 | 41.0 | 4.50e-01 | 85.5% | 92.5% |
| 3683687 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.60 | 50.0 | 2.79e-01 | 90.9% | 17.8% |
| 4962153 | 7056.1.1.0 ↗ | few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan | 0.59 | 41.0 | 4.38e-01 | 81.8% | 91.1% |
| 3252771 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.58 | 46.0 | 4.20e-01 | 100.0% | 98.8% |
| 4026201 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.54 | 46.0 | 3.41e-01 | 100.0% | 79.4% |
| 4980443 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.52 | 42.0 | 3.45e-01 | 92.7% | 87.3% |
| 3366088 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.52 | 42.0 | 2.76e-01 | 98.2% | 52.2% |
| 3698362 | 11.1.1.1046 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28431 | 0.52 | 40.0 | 3.24e-01 | 96.4% | 51.9% |
| 4991814 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.50 | 42.0 | 3.22e-01 | 100.0% | 41.4% |