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MN698243.1__QGZ17966.1__HTVC104P_gp12__00012

Bact-Vir

MN698243.1__QGZ17966.1__HTVC104P_gp12__00012

Identity

Accession:
MN698243 ↗
Kingdom:
phage

Quality

81.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-60
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.74 65.0 4.62e-01 100.0% 58.1%
5m3nA03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.73 51.0 4.27e-01 100.0% 43.3%
2p3wB01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.72 51.0 4.23e-01 100.0% 43.8%
2xf1A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.71 60.0 4.78e-01 100.0% 73.8%
3wkmB01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.69 53.0 4.47e-01 100.0% 50.0%
2l97A01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.68 51.0 4.22e-01 100.0% 45.5%
4m52A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.68 36.0 2.83e-01 100.0% 23.1%
6iccA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.67 48.0 4.27e-01 100.0% 51.2%
4h8wC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 52.0 4.74e-01 100.0% 64.0%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.66 54.0 4.00e-01 98.2% 94.0%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.65 55.0 4.77e-01 100.0% 95.7%
2kjkA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.65 48.0 3.99e-01 100.0% 45.0%
2zplB00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.64 48.0 4.14e-01 100.0% 50.0%
2y8tA03 2.10.70.70 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.63 36.0 3.68e-01 100.0% 56.4%
6etzA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 50.0 4.45e-01 100.0% 59.5%
1y6kR01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 53.0 4.48e-01 100.0% 61.8%
2o18A00 3.10.520.10 Alpha Beta › Roll › T-fold › ApbE-like domains 0.62 51.0 3.29e-01 100.0% 18.9%
4fd0A01 2.60.40.3630 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 36.0 3.29e-01 100.0% 39.2%
4o06A00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.61 47.0 3.86e-01 100.0% 46.1%
1dn0D02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 52.0 4.47e-01 100.0% 69.1%
5of3A00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.59 48.0 3.11e-01 100.0% 68.3%
1dfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 44.0 3.22e-01 85.7% 80.9%
4yo1A03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.58 50.0 4.30e-01 100.0% 70.5%
4c23B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 48.0 3.30e-01 100.0% 91.9%
5hmaA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 49.0 4.36e-01 100.0% 64.4%
2kjpA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.58 43.0 3.87e-01 100.0% 57.0%
4jj0B00 2.30.42.60 Mainly Beta › Roll › Pdz3 Domain › 0.57 49.0 3.50e-01 100.0% 36.1%
2lstA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 39.0 3.04e-01 71.4% 69.2%
2oz4A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 42.0 3.74e-01 100.0% 54.2%
5wy8B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 48.0 4.04e-01 100.0% 55.1%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.57 45.0 3.01e-01 91.1% 49.2%
3pv2A03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.56 49.0 4.28e-01 100.0% 87.5%
1hkgA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 47.0 3.73e-01 100.0% 83.8%
1rzmA01 3.30.70.1140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1 0.56 41.0 3.73e-01 82.1% 86.3%
1fltX00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 45.0 3.98e-01 100.0% 60.0%
4iwxA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 48.0 3.87e-01 100.0% 71.2%
3qo6A03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.55 48.0 3.97e-01 100.0% 76.5%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 39.0 3.30e-01 82.1% 62.9%
7co7D03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.53 47.0 3.96e-01 100.0% 69.1%
3lmmA03 3.30.565.60 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › 0.53 43.0 3.18e-01 96.4% 96.5%
4gafB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.66e-01 100.0% 55.7%
1zhvA00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.53 42.0 3.26e-01 91.1% 53.0%
1pzxA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.52 43.0 3.52e-01 100.0% 74.6%
1f06A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 40.0 3.13e-01 91.1% 53.6%
2ci8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 35.0 3.60e-01 91.1% 76.8%
2i6vA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.50 43.0 3.80e-01 100.0% 77.0%
4ffeX00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.50 43.0 3.22e-01 100.0% 66.7%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5006740 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.73 51.0 4.06e-01 100.0% 36.5%
5080205 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.73 57.0 5.92e-01 85.7% 98.0%
4530301 7.1.1.10 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.72 52.0 4.68e-01 100.0% 55.0%
5016589 3325.1.1.1 a+b two layers › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA › UvrA_inter 0.69 60.0 4.75e-01 98.2% 87.8%
5048876 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.69 60.0 5.77e-01 100.0% 95.4%
4466946 3325.1.1.0 a+b two layers › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA 0.68 58.0 4.69e-01 100.0% 84.3%
3171963 224.1.1.1 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.68 57.0 4.47e-01 100.0% 70.8%
4995626 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 57.0 5.29e-01 100.0% 74.7%
4157620 11.1.1.608 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Por_Secre_tail 0.67 52.0 4.66e-01 100.0% 58.8%
3251030 224.1.1.1 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.67 56.0 4.36e-01 100.0% 68.1%
3611020 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.66 55.0 3.87e-01 100.0% 31.2%
4992167 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.66 56.0 3.30e-01 100.0% 30.2%
3243593 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.66 54.0 4.57e-01 100.0% 81.9%
3319149 224.1.1.3 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Staygreen 0.65 57.0 4.17e-01 100.0% 39.4%
3224684 2486.1.1.3 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans 0.65 56.0 3.54e-01 100.0% 18.4%
5070706 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 57.0 4.73e-01 100.0% 67.0%
3954468 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.65 50.0 3.47e-01 85.7% 66.3%
5003947 7.1.1.5 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.65 48.0 3.53e-01 100.0% 30.0%
3258282 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 56.0 4.75e-01 100.0% 60.0%
3988804 3414.1.1.0 beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein 0.64 41.0 3.71e-01 100.0% 48.0%
5081134 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.64 54.0 5.34e-01 100.0% 93.3%
3838206 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.63 45.0 3.96e-01 100.0% 50.0%
3966472 223.8.1.2 a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain › CHASE8 0.63 47.0 3.41e-01 83.9% 34.1%
3706728 221.7.1.0 a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 0.62 55.0 4.37e-01 100.0% 62.6%
3720043 7.1.1.5 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.62 46.0 3.83e-01 100.0% 43.8%
4985428 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.62 52.0 4.79e-01 100.0% 94.9%
3988186 7.1.1.5 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.62 46.0 3.58e-01 100.0% 36.0%
3321727 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.62 52.0 4.88e-01 100.0% 77.1%
3993586 7.1.1.1 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.62 48.0 4.29e-01 100.0% 60.0%
3611538 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.62 46.0 4.68e-01 100.0% 85.5%
3236097 7.1.1.10 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.62 47.0 4.13e-01 100.0% 55.3%
4010783 223.8.1.2 a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain › CHASE8 0.61 46.0 3.78e-01 83.9% 53.6%
3272269 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.61 44.0 3.03e-01 83.9% 20.0%
4952123 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.60 48.0 4.82e-01 100.0% 100.0%
4013664 224.1.1.0 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.60 47.0 3.76e-01 98.2% 73.6%
3587814 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 49.0 4.01e-01 100.0% 71.3%
136205 7.1.1.5 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.58 43.0 3.81e-01 100.0% 54.2%
3622516 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.57 47.0 3.97e-01 100.0% 69.7%
4024483 7.1.1.5 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.56 48.0 4.22e-01 100.0% 74.2%
3963089 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 47.0 3.94e-01 100.0% 71.8%
5004009 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.56 49.0 4.32e-01 100.0% 77.6%
4212763 7.1.1.1 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.56 47.0 4.21e-01 100.0% 81.2%
4967628 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.56 48.0 4.26e-01 100.0% 77.6%
4322608 7.1.1.10 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.56 48.0 4.27e-01 100.0% 87.1%
3795541 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 46.0 3.88e-01 100.0% 69.7%
3166282 7.1.1.1 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.55 49.0 4.27e-01 100.0% 76.5%
4994502 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.55 46.0 4.01e-01 100.0% 71.6%
3875549 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.55 45.0 3.25e-01 100.0% 83.6%
3789849 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 46.0 4.57e-01 100.0% 95.0%
5038375 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.55 44.0 3.18e-01 100.0% 86.0%
4456474 3019.1.1.0 beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain 0.54 43.0 3.68e-01 100.0% 80.9%
135643 7.1.1.5 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.54 46.0 4.06e-01 100.0% 75.9%
3354230 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.53 47.0 3.86e-01 100.0% 64.1%
5024215 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.53 42.0 3.56e-01 100.0% 80.9%
4479761 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.53 46.0 3.82e-01 100.0% 67.0%
4030031 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.52 44.0 3.63e-01 100.0% 61.8%
4007430 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.52 44.0 3.85e-01 100.0% 75.6%
4029468 3156.3.1.0 beta sandwiches › Cupredoxin-like › Surface antigen 1 (SAG1)-related-sequence (SRS) family › Surface antigen 1 (SAG1)-related-sequence (SRS) family 0.51 43.0 3.28e-01 100.0% 62.7%
3940062 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.51 38.0 2.46e-01 82.1% 25.7%
3813009 207.1.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1 0.51 41.0 2.51e-01 89.3% 50.3%
3544143 192.8.1.283 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Lectin_C 0.50 40.0 2.76e-01 96.4% 36.3%
3679968 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.50 37.0 2.70e-01 85.7% 70.7%
3787619 206.1.3.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.50 42.0 3.43e-01 100.0% 69.6%