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MN698243.1__QGZ18022.1__HTVC104P_gp68__00068
Bact-VirMN698243.1__QGZ18022.1__HTVC104P_gp68__00068
Identity
- Accession:
- MN698243 ↗
- Kingdom:
- phage
Quality
87.8
mean pLDDT
Cluster
View cluster (7 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 76-124
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7oo1A01 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.76 | 52.0 | 4.49e-01 | 73.5% | 70.1% |
| 3n3fA01 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.75 | 60.0 | 6.26e-01 | 93.9% | 100.0% |
| 4dt4A02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.74 | 51.0 | 4.93e-01 | 73.5% | 78.9% |
| 3hshE00 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.74 | 59.0 | 5.73e-01 | 93.9% | 78.2% |
| 3qtgA02 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.69 | 53.0 | 4.25e-01 | 83.7% | 75.5% |
| 3prbA02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.69 | 47.0 | 4.97e-01 | 73.5% | 93.2% |
| 1yu0A01 | 2.10.10.30 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › | 0.68 | 51.0 | 5.05e-01 | 100.0% | 80.4% |
| 3gqbA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.65 | 51.0 | 4.53e-01 | 87.8% | 71.8% |
| 3kw2A01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.65 | 54.0 | 4.99e-01 | 100.0% | 89.7% |
| 3ednA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.60 | 49.0 | 3.74e-01 | 100.0% | 72.4% |
| 1wquA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.59 | 49.0 | 3.90e-01 | 100.0% | 43.9% |
| 4oa3A00 | 3.10.310.50 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.59 | 51.0 | 3.73e-01 | 100.0% | 63.8% |
| 3fveA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.59 | 47.0 | 3.46e-01 | 98.0% | 54.5% |
| 6khjH01 | 1.10.645.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B | 0.58 | 41.0 | 2.55e-01 | 81.6% | 76.0% |
| 1bwzA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.56 | 44.0 | 3.45e-01 | 95.9% | 51.2% |
| 6qm7J00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.56 | 44.0 | 3.09e-01 | 95.9% | 45.6% |
| 1clwA00 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.55 | 44.0 | 2.59e-01 | 100.0% | 10.5% |
| 3k2tA01 | 3.30.505.50 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain | 0.54 | 42.0 | 4.28e-01 | 100.0% | 97.8% |
| 4gc1A01 | 2.90.10.10 | Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain | 0.52 | 39.0 | 3.26e-01 | 89.8% | 75.0% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3987740 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.89 | 65.0 | 7.14e-01 | 91.8% | 95.0% |
| 3498702 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.78 | 62.0 | 6.44e-01 | 85.7% | 93.3% |
| 3900165 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.77 | 58.0 | 6.17e-01 | 87.8% | 93.0% |
| 3989853 | 77.1.1.13 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › CFSR | 0.74 | 67.0 | 3.99e-01 | 98.0% | 34.6% |
| 3921177 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.73 | 53.0 | 5.18e-01 | 95.9% | 70.9% |
| 3528795 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.72 | 55.0 | 5.65e-01 | 95.9% | 91.1% |
| 3393851 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.71 | 62.0 | 4.43e-01 | 100.0% | 78.6% |
| 3755669 | 391.1.1.5 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa | 0.69 | 44.0 | 4.75e-01 | 75.5% | 80.0% |
| 3408206 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.69 | 60.0 | 4.21e-01 | 100.0% | 81.2% |
| 1107990 | 3761.1.1.1 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N | 0.68 | 51.0 | 5.08e-01 | 100.0% | 82.0% |
| 4930189 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.67 | 53.0 | 5.04e-01 | 91.8% | 90.0% |
| 2495545 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.67 | 50.0 | 2.90e-01 | 100.0% | 9.0% |
| 4928895 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.66 | 55.0 | 3.50e-01 | 98.0% | 22.0% |
| 3958547 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.66 | 55.0 | 5.06e-01 | 95.9% | 90.8% |
| 3505939 | 270.1.1.1 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Pur_DNA_glyco | 0.66 | 47.0 | 3.68e-01 | 77.6% | 42.7% |
| 5071089 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.65 | 47.0 | 4.70e-01 | 77.6% | 76.0% |
| 4976953 | 375.1.1.63 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular | 0.65 | 45.0 | 4.37e-01 | 77.6% | 64.8% |
| 3391363 | 2492.1.1.36 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › ODR4-like | 0.65 | 55.0 | 3.80e-01 | 100.0% | 82.2% |
| 4032931 | 286.1.1.5 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › CntK_N | 0.64 | 53.0 | 4.07e-01 | 100.0% | 53.6% |
| 4991056 | 375.1.1.63 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular | 0.63 | 44.0 | 4.31e-01 | 79.6% | 67.3% |
| 3975132 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.63 | 54.0 | 4.49e-01 | 98.0% | 61.1% |
| 4927153 | 375.1.1.63 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular | 0.62 | 43.0 | 4.24e-01 | 79.6% | 67.3% |
| 4934330 | 2007.1.2.13 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_6 | 0.62 | 52.0 | 3.68e-01 | 100.0% | 92.9% |
| 4945330 | 4294.1.1.11 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › ResIII | 0.61 | 40.0 | 3.68e-01 | 81.6% | 48.6% |
| 3388074 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.61 | 52.0 | 4.35e-01 | 100.0% | 66.7% |
| 169137 | 286.1.1.2 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF | 0.60 | 48.0 | 3.73e-01 | 100.0% | 54.2% |
| 5069323 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 41.0 | 4.17e-01 | 75.5% | 90.0% |
| 3937854 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.58 | 48.0 | 3.98e-01 | 100.0% | 51.0% |
| 3931292 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.58 | 40.0 | 4.32e-01 | 75.5% | 90.0% |
| 3982481 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.57 | 48.0 | 4.47e-01 | 100.0% | 87.7% |
| 1513169 | 6043.1.1.2 ↗ | a+b two layers › yfeY-like › yfeY-like › yfeY-like › DUF4309 | 0.56 | 40.0 | 3.51e-01 | 79.6% | 72.8% |
| 3356654 | 221.1.2.20 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4e | 0.56 | 45.0 | 4.36e-01 | 100.0% | 78.2% |
| 3307036 | 375.1.1.69 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_12 | 0.56 | 40.0 | 4.03e-01 | 79.6% | 80.0% |
| 5017637 | 4.1.1.458 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2098 | 0.52 | 38.0 | 3.71e-01 | 87.8% | 72.7% |
| 3511673 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.50 | 43.0 | 2.69e-01 | 100.0% | 60.7% |
D2
medium
residues 135-242_370-429
Domain cluster:
rep: KM199771.1__AIK68527.1__Lo5R7ANS_57__00057__D358-488_526-544
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF21722.5 best | Gly_rich_2 | 29.3 | 1.20e-06 | 97.0% | 65.2% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2nykA02 | 2.60.40.2530 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.65 | 27.0 | 3.70e-01 | 100.0% | 74.7% |
| 1wzaA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.62 | 29.0 | 4.15e-01 | 98.8% | 94.9% |
| 1hn0A04 | 2.60.220.10 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal | 0.61 | 33.0 | 3.84e-01 | 100.0% | 72.1% |
| 7uzsX03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 29.0 | 3.43e-01 | 95.8% | 69.6% |
| 3wy2A03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.56 | 26.0 | 3.67e-01 | 100.0% | 97.3% |
| 5e9aB03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.53 | 22.0 | 3.34e-01 | 95.8% | 98.4% |
| 3ebrA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 27.0 | 2.78e-01 | 100.0% | 47.4% |
| 4r7vA00 | 2.60.40.640 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 32.0 | 3.38e-01 | 95.8% | 67.1% |
| 1xf1A03 | 2.60.40.1710 | Mainly Beta › Sandwich › Immunoglobulin-like › Subtilisin-like superfamily | 0.52 | 30.0 | 3.30e-01 | 95.8% | 67.9% |
| 3w5mA06 | 2.60.420.10 | Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 | 0.51 | 31.0 | 3.85e-01 | 95.8% | 100.0% |
| 2fauA01 | 2.60.40.640 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 27.0 | 2.89e-01 | 95.8% | 57.6% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4223061 | 11.31.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Beta-galactosidase LacA beta-sandwich domain › Beta-galactosidase LacA beta-sandwich domain › BetaGal_dom2 | 0.67 | 33.0 | 4.45e-01 | 100.0% | 87.8% |
| 1963 | 12.1.1.3 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amylase_C | 0.62 | 29.0 | 4.15e-01 | 98.8% | 94.9% |
| 4990127 | 11.31.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Beta-galactosidase LacA beta-sandwich domain › Beta-galactosidase LacA beta-sandwich domain | 0.62 | 31.0 | 3.86e-01 | 98.8% | 76.2% |
| 5040532 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 30.0 | 3.38e-01 | 95.8% | 61.5% |
| 4927680 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 29.0 | 3.24e-01 | 95.8% | 60.0% |
| 4682208 | 12.2.1.1 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › Lyase_8_C | 0.54 | 31.0 | 3.65e-01 | 100.0% | 78.3% |
| 4402932 | 12.2.1.1 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › Lyase_8_C | 0.51 | 33.0 | 3.73e-01 | 100.0% | 85.6% |
| 5057583 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.51 | 38.0 | 3.96e-01 | 100.0% | 82.6% |
D3
medium
residues 243-300
Domain cluster:
representative
D4
medium
residues 301-369
Domain cluster:
representative