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MN698244.1__QGZ18097.1__HTVC106P_gp54__00054
Bact-VirMN698244.1__QGZ18097.1__HTVC106P_gp54__00054
Identity
- Accession:
- MN698244 ↗
- Kingdom:
- phage
Quality
82.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 5-134
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4tkoB01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.66 | 45.0 | 5.22e-01 | 100.0% | 97.8% |
| 4he6A00 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.63 | 41.0 | 4.88e-01 | 100.0% | 96.6% |
| 2qi2A01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.62 | 41.0 | 4.58e-01 | 99.2% | 84.6% |
| 1hpgA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.61 | 35.0 | 4.01e-01 | 100.0% | 75.8% |
| 1boqA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.60 | 34.0 | 3.80e-01 | 100.0% | 69.2% |
| 3obyA01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.59 | 39.0 | 4.27e-01 | 99.2% | 81.7% |
| 1havB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.55 | 34.0 | 3.76e-01 | 100.0% | 76.7% |
| 2piaA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 41.0 | 4.53e-01 | 99.2% | 96.2% |
| 3ghgB02 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.52 | 44.0 | 3.54e-01 | 92.3% | 98.9% |
| 5tr9A01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.52 | 37.0 | 4.14e-01 | 100.0% | 100.0% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4194551 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.73 | 41.0 | 5.19e-01 | 100.0% | 94.7% |
| 4083044 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.71 | 42.0 | 5.33e-01 | 99.2% | 100.0% |
| 4943366 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.71 | 45.0 | 5.49e-01 | 73.1% | 97.6% |
| 4518787 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.71 | 41.0 | 5.24e-01 | 100.0% | 100.0% |
| 4066146 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.70 | 43.0 | 4.80e-01 | 70.0% | 76.2% |
| 3972951 | 1.1.7.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 | 0.69 | 40.0 | 5.09e-01 | 96.2% | 98.7% |
| 4854964 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.66 | 39.0 | 4.65e-01 | 99.2% | 88.4% |
| 5056905 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.63 | 43.0 | 5.06e-01 | 99.2% | 100.0% |
| 4138546 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.63 | 42.0 | 4.91e-01 | 70.0% | 97.8% |
| 4946423 | 1.1.7.138 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › NAD_binding_1 | 0.62 | 43.0 | 4.80e-01 | 70.8% | 96.0% |
| 4163756 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.62 | 41.0 | 4.63e-01 | 70.0% | 91.6% |
| 3822637 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.61 | 37.0 | 4.22e-01 | 99.2% | 82.1% |
| 5009352 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 32.0 | 3.73e-01 | 96.2% | 84.7% |
| 3254695 | 11.1.1.802 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8390 | 0.54 | 33.0 | 3.73e-01 | 96.2% | 82.1% |
| 3532345 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.50 | 29.0 | 3.21e-01 | 97.7% | 68.6% |
| 5060181 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 29.0 | 3.38e-01 | 96.2% | 83.5% |
D2
medium
residues 385-456
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cx0A02 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.55 | 40.0 | 3.86e-01 | 77.8% | 92.8% |
| 1t62B00 | 3.10.400.10 | Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase | 0.55 | 42.0 | 3.34e-01 | 86.1% | 80.4% |
| 4e2oA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.50 | 34.0 | 3.23e-01 | 70.8% | 83.0% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3970830 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.65 | 49.0 | 4.42e-01 | 81.9% | 88.0% |
| 5002753 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.64 | 49.0 | 4.64e-01 | 81.9% | 96.5% |
| 3059161 | 1.1.13.30 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_GP41 | 0.61 | 45.0 | 4.39e-01 | 80.6% | 90.2% |
| 3944719 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.56 | 41.0 | 3.31e-01 | 77.8% | 79.9% |
| 4969998 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.55 | 38.0 | 3.93e-01 | 73.6% | 91.3% |
| 4629857 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.53 | 39.0 | 3.97e-01 | 81.9% | 95.7% |
D3
medium
residues 457-513
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5hk0B00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 47.0 | 3.92e-01 | 96.5% | 46.7% |
| 3mtsA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.60 | 36.0 | 3.55e-01 | 77.2% | 54.8% |
| 2epbA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.59 | 41.0 | 3.94e-01 | 75.4% | 61.8% |
| 3p8bB02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 42.0 | 4.11e-01 | 91.2% | 71.0% |
| 1k28D03 | 2.40.30.150 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 | 0.58 | 47.0 | 4.03e-01 | 93.0% | 54.7% |
| 1dzaA00 | 3.10.130.10 | Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain | 0.55 | 44.0 | 3.56e-01 | 93.0% | 78.3% |
| 1wxrA03 | 3.30.160.280 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 44.0 | 4.01e-01 | 91.2% | 72.4% |
| 3buuB00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.53 | 43.0 | 3.02e-01 | 96.5% | 87.7% |
| 2m2lA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 34.0 | 3.30e-01 | 75.4% | 53.7% |
| 4xa2A01 | 3.30.700.10 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin | 0.53 | 39.0 | 3.24e-01 | 84.2% | 78.8% |
| 1n27A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 43.0 | 3.63e-01 | 91.2% | 85.4% |
| 1qhdA02 | 1.10.1350.10 | Mainly Alpha › Orthogonal Bundle › Viral capsid alpha domain › Viral capsid alpha domain | 0.52 | 38.0 | 2.62e-01 | 80.7% | 37.9% |
| 3nmzD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 38.0 | 3.41e-01 | 80.7% | 65.5% |
| 6m9yA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.50 | 34.0 | 3.46e-01 | 78.9% | 71.9% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3946464 | 3103.1.1.0 ↗ | alpha arrays › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Uncharacterized protein yqbN | 0.65 | 44.0 | 3.82e-01 | 71.9% | 72.6% |
| 3833590 | 387.1.1.10 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › zf-GRF | 0.63 | 40.0 | 4.41e-01 | 71.9% | 82.2% |
| 3309726 | 375.1.1.191 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_GRF | 0.63 | 42.0 | 4.34e-01 | 70.2% | 78.2% |
| 3711384 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 44.0 | 3.91e-01 | 82.5% | 50.6% |
| 4029093 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 41.0 | 3.04e-01 | 80.7% | 25.8% |
| 3692884 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.61 | 42.0 | 3.95e-01 | 71.9% | 70.0% |
| 3752656 | 387.1.1.10 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › zf-GRF | 0.60 | 45.0 | 4.37e-01 | 82.5% | 80.0% |
| 4551342 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.60 | 49.0 | 4.35e-01 | 93.0% | 72.9% |
| 3746411 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.59 | 41.0 | 3.73e-01 | 75.4% | 54.7% |
| 3651459 | 375.1.1.191 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_GRF | 0.59 | 40.0 | 4.40e-01 | 78.9% | 91.1% |
| 3562105 | 387.1.1.10 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › zf-GRF | 0.59 | 40.0 | 4.38e-01 | 77.2% | 88.9% |
| 3621231 | 387.1.1.10 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › zf-GRF | 0.59 | 39.0 | 4.31e-01 | 73.7% | 88.9% |
| 3189012 | 387.1.1.10 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › zf-GRF | 0.58 | 42.0 | 4.32e-01 | 80.7% | 80.0% |
| 4629022 | 4.1.1.238 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 | 0.58 | 39.0 | 3.71e-01 | 80.7% | 57.1% |
| 3497989 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 43.0 | 4.30e-01 | 89.5% | 78.3% |
| 3721794 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 35.0 | 3.52e-01 | 71.9% | 60.0% |
| 1945687 | 387.1.1.10 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › zf-GRF | 0.57 | 40.0 | 3.84e-01 | 75.4% | 68.7% |
| 5038531 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.56 | 46.0 | 4.44e-01 | 91.2% | 89.2% |
| 3363865 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.56 | 40.0 | 4.27e-01 | 77.2% | 87.8% |
| 3585652 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 42.0 | 4.20e-01 | 86.0% | 80.0% |
| 3673582 | 387.1.1.10 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › zf-GRF | 0.55 | 39.0 | 4.11e-01 | 75.4% | 85.7% |
| 3634784 | 10.12.1.51 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 | 0.55 | 44.0 | 2.80e-01 | 91.2% | 82.8% |
| 3727983 | 387.1.1.10 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › zf-GRF | 0.54 | 42.0 | 4.08e-01 | 86.0% | 75.4% |
| 3170205 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.54 | 37.0 | 2.74e-01 | 73.7% | 27.1% |
| 3995092 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.54 | 43.0 | 3.04e-01 | 91.2% | 45.0% |
| 3630759 | 375.7.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Zn-binding domains of ADDBP › Zn-binding domains of ADDBP › Zn_ribbon_GRF | 0.54 | 42.0 | 4.16e-01 | 86.0% | 81.7% |
| 4020093 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 45.0 | 3.53e-01 | 100.0% | 77.0% |
| 3925642 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.53 | 38.0 | 3.19e-01 | 77.2% | 51.0% |
| 4018632 | 387.1.1.10 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › zf-GRF | 0.52 | 40.0 | 3.87e-01 | 86.0% | 72.1% |
| 3906109 | 4135.1.1.0 ↗ | beta duplicates or obligate multimers › MAL13P1.257-like › MAL13P1.257-like › MAL13P1.257-like | 0.51 | 38.0 | 2.91e-01 | 77.2% | 44.2% |
| 3601659 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.50 | 43.0 | 3.25e-01 | 100.0% | 62.0% |