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MN698245.1__QGZ18146.1__HTVC111P_gp33__00033

Bact-Vir

MN698245.1__QGZ18146.1__HTVC111P_gp33__00033

Identity

Accession:
MN698245 ↗
Kingdom:
phage

Quality

94.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pelagibacter_phage_HTVC111P

TaxID: 2686461

Cluster

View cluster (42 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-216
PDB
Domain cluster: rep: IMGVR_UViG_3300033141_000944-3300033141-Ga0366833_100713519__D3-181
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ljbA00 1.20.120.1240 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Dynamin, middle domain 0.71 53.0 5.28e-01 77.0% 74.0%
2oerA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.64 32.0 3.48e-01 80.8% 54.7%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.62 35.0 4.03e-01 86.4% 73.4%
3agtA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.59 33.0 4.07e-01 77.0% 85.7%
3pwxA01 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.57 40.0 4.29e-01 89.2% 81.0%
3tp3A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 33.0 3.84e-01 89.7% 79.1%
2id3A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 29.0 3.53e-01 82.6% 72.5%
1ek9A00 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.57 43.0 3.45e-01 78.9% 88.1%
2olpA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 30.0 3.54e-01 95.3% 74.8%
3kyiA00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.54 32.0 3.95e-01 92.0% 93.8%
2x0cA01 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.54 35.0 3.76e-01 77.9% 75.8%
1sziA02 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.52 34.0 4.10e-01 89.2% 100.0%
6adqG01 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.52 36.0 3.89e-01 84.5% 82.6%
1oshA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.52 30.0 3.06e-01 86.4% 56.0%
3c18A02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.52 30.0 3.87e-01 83.1% 100.0%
3mfnB00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.52 31.0 3.90e-01 78.4% 99.2%
2yevA03 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.52 36.0 3.81e-01 82.6% 79.3%
3pjaJ01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.52 32.0 3.98e-01 99.5% 99.2%
1tqnA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.51 46.0 3.56e-01 96.2% 67.3%
2hs5A02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.51 33.0 3.93e-01 91.5% 96.4%
1b0bA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.50 28.0 3.32e-01 95.8% 78.0%
1ecaA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.50 26.0 3.19e-01 95.8% 75.0%
2qibB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.50 33.0 3.37e-01 89.2% 66.3%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3165030 601.19.1.3 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Phage_Mu_F 0.78 59.0 6.20e-01 77.0% 85.6%
3270023 601.19.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein 0.76 57.0 5.39e-01 76.5% 80.0%
None — 0.70 53.0 3.74e-01 77.0% 34.0%
None — 0.70 53.0 3.77e-01 77.0% 37.3%
4960488 3615.1.1.0 ↗ alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain 0.69 51.0 4.30e-01 76.5% 50.9%
None — 0.69 52.0 3.69e-01 77.5% 34.2%
None — 0.67 51.0 3.61e-01 77.0% 33.4%
3438249 601.18.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 0.67 33.0 4.72e-01 89.7% 100.0%
None — 0.65 44.0 4.60e-01 70.9% 74.4%
4946169 7064.1.1.0 ↗ alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 0.63 50.0 5.11e-01 91.5% 85.8%
3958112 1075.1.2.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.62 47.0 4.52e-01 88.7% 67.8%
3740431 109.4.1.87 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec6 0.58 35.0 2.43e-01 70.0% 18.3%
3842814 601.27.1.5 ↗ alpha bundles › Four-helical up-and-down bundle › MW0975(SA0943)-like › MW0975(SA0943)-like › DUF4455 0.58 44.0 4.16e-01 77.9% 91.8%
3271194 6108.1.1.11 ↗ alpha bundles › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Dynamin_N 0.57 53.0 3.68e-01 99.5% 38.2%
4397448 192.2.1.71 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › PF27758 0.57 43.0 4.12e-01 77.5% 93.5%
3591291 1076.1.1.1 ↗ alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like 0.56 42.0 4.34e-01 91.1% 80.9%
3925439 3615.1.1.0 ↗ alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain 0.56 42.0 3.56e-01 77.5% 100.0%
3498895 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.55 37.0 4.38e-01 88.3% 99.3%
4634670 5067.1.1.1 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › ACR_tran 0.55 31.0 3.16e-01 74.2% 53.5%
4982292 5045.1.1.0 ↗ alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A 0.55 40.0 3.95e-01 74.2% 87.1%
4032308 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.54 41.0 4.47e-01 89.2% 95.3%
3592211 633.21.1.0 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.54 27.0 3.54e-01 95.8% 88.2%
5000534 601.30.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N 0.53 37.0 4.16e-01 80.3% 93.1%
3739242 3291.1.1.1 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.52 37.0 4.19e-01 73.2% 95.2%
3388493 633.10.1.15 ↗ alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › Transmemb_17 0.51 26.0 3.29e-01 100.0% 79.2%
5028018 5045.1.1.0 ↗ alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A 0.51 47.0 4.19e-01 100.0% 91.7%
5040597 1075.5.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter 0.50 36.0 3.79e-01 95.8% 81.6%
D2 high residues 239-320
PDB
Domain cluster: rep: IMGVR_UViG_3300033141_000944-3300033141-Ga0366833_100713519__D200-280
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xgsA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 43.0 4.46e-01 96.3% 87.0%
3fm3A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 4.16e-01 96.3% 87.5%
2q8kA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 36.0 4.02e-01 86.6% 98.3%
3n2oA03 1.20.58.930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 40.0 3.83e-01 84.1% 81.2%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2679 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 43.0 4.46e-01 96.3% 87.0%
3291669 101.1.2.294 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF742 0.56 43.0 4.36e-01 100.0% 86.3%
4402755 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 40.0 4.37e-01 96.3% 100.0%
4049320 299.1.1.0 ↗ a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain 0.54 40.0 3.26e-01 92.7% 40.6%
3595250 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 35.0 3.89e-01 92.7% 100.0%