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MN698245.1__QGZ18163.1__HTVC111P_gp50__00050

Bact-Vir

MN698245.1__QGZ18163.1__HTVC111P_gp50__00050

Identity

Accession:
MN698245 ↗
Kingdom:
phage

Quality

93.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 43-135
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02794.23 best HlyC 28.8 1.40e-06 87.1% 61.4%
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4u1qA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 47.0 3.76e-01 75.3% 89.3%
3dtnA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 44.0 3.50e-01 74.2% 85.6%
2efjA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 49.0 3.73e-01 87.1% 82.7%
6d6zA02 3.40.50.11440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LarA, N-terminal domain 0.60 46.0 3.49e-01 83.9% 80.1%
4dcmA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 42.0 3.38e-01 74.2% 80.0%
2yjgA02 3.40.50.11440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LarA, N-terminal domain 0.59 46.0 3.46e-01 83.9% 81.1%
3e0vB01 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.58 43.0 3.68e-01 81.7% 87.6%
4h5uA00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.57 42.0 3.00e-01 79.6% 74.9%
1a49A01 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.56 43.0 3.60e-01 83.9% 83.5%
4narA01 3.40.50.11440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LarA, N-terminal domain 0.56 45.0 3.34e-01 87.1% 82.8%
4ckbA01 3.30.470.140 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › 0.56 44.0 3.57e-01 84.9% 75.3%
1dusA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 43.0 3.37e-01 81.7% 75.3%
4gl6A02 3.10.310.80 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Domain of unknown function (DUF5037), C-terminal subdomain 0.55 46.0 3.95e-01 92.5% 87.7%
2qvxX02 3.40.50.980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 41.0 3.56e-01 79.6% 92.5%
2zyzB02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.55 41.0 4.10e-01 80.6% 91.6%
7cpxA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 45.0 3.08e-01 89.2% 87.4%
4pv6A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 46.0 3.95e-01 94.6% 64.9%
3sm4A00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.54 48.0 3.65e-01 100.0% 58.7%
2x3eA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.54 40.0 3.48e-01 79.6% 66.9%
3kzhB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.54 41.0 2.91e-01 82.8% 98.1%
1u6eA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.53 38.0 3.27e-01 74.2% 65.3%
1u0mA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.53 39.0 3.38e-01 77.4% 70.5%
1eblA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.53 38.0 3.29e-01 74.2% 66.0%
3ib5A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.53 42.0 2.87e-01 95.7% 23.4%
1zowA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.53 37.0 3.33e-01 74.2% 71.2%
5by7A02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.53 37.0 3.29e-01 75.3% 67.8%
1vdmG00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 36.0 3.07e-01 71.0% 74.3%
6wmnD01 3.90.550.50 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › 0.52 44.0 3.16e-01 94.6% 63.7%
3iwgA01 3.40.630.80 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › 0.52 42.0 3.79e-01 88.2% 89.2%
3h4rA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.52 45.0 3.52e-01 100.0% 75.8%
3il4A02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.52 37.0 3.25e-01 74.2% 95.9%
3e38B01 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.51 38.0 2.86e-01 79.6% 37.1%
4ftfA00 3.30.300.250 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.51 40.0 3.81e-01 92.5% 73.4%
3s3lA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.50 38.0 3.19e-01 79.6% 52.8%
3gwaA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.50 35.0 3.06e-01 74.2% 60.2%
3fk5A02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.50 37.0 3.30e-01 79.6% 60.0%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4649881 213.1.1.8 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › HlyC 0.84 73.0 6.18e-01 91.4% 64.3%
4516909 213.1.1.8 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › HlyC 0.79 70.0 5.66e-01 94.6% 53.9%
1558584 213.1.1.8 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › HlyC 0.74 65.0 5.23e-01 95.7% 51.8%
3594010 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.65 56.0 4.38e-01 94.6% 69.7%
3410142 213.1.1.46 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › CFAP61_N 0.64 57.0 4.57e-01 96.8% 68.3%
3849127 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 31.0 4.02e-01 88.2% 84.0%
4081795 2008.1.1.27 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 0.64 52.0 3.57e-01 89.2% 75.3%
4882261 2008.1.1.27 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 0.64 52.0 3.49e-01 89.2% 73.0%
3704410 213.1.1.46 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › CFAP61_N 0.64 52.0 4.17e-01 89.2% 92.4%
4098518 2008.1.1.27 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 0.64 52.0 3.46e-01 89.2% 71.1%
5055290 244.4.1.4 a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › PF27537 0.63 25.0 2.96e-01 87.1% 50.0%
5010746 7592.1.1.5 a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › Csx1_CARF 0.63 53.0 3.76e-01 93.5% 95.3%
4195739 213.1.1.46 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › CFAP61_N 0.63 55.0 4.45e-01 95.7% 92.0%
4382307 213.1.1.46 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › CFAP61_N 0.63 55.0 4.46e-01 95.7% 92.0%
3487052 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.62 54.0 4.48e-01 96.8% 92.1%
3499125 213.1.1.46 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › CFAP61_N 0.62 54.0 4.39e-01 96.8% 87.4%
3598626 2008.2.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.62 42.0 4.26e-01 86.0% 72.2%
4445114 2003.1.5.46 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.61 43.0 3.50e-01 74.2% 83.9%
5030224 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.61 52.0 4.99e-01 92.5% 85.7%
5019077 7601.1.1.1 a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lar_N 0.60 47.0 3.51e-01 83.9% 77.9%
4359950 213.1.1.99 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › PF29820 0.60 54.0 4.27e-01 100.0% 63.2%
4999168 7601.1.1.1 a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lar_N 0.60 47.0 3.49e-01 83.9% 79.1%
4954734 7518.1.1.1 a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.59 45.0 4.16e-01 80.6% 91.7%
4956673 7601.1.1.1 a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lar_N 0.59 46.0 3.50e-01 83.9% 82.2%
3961432 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.59 45.0 3.79e-01 80.6% 82.6%
3600856 7518.1.1.0 a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like 0.58 43.0 3.86e-01 78.5% 86.6%
5062353 7601.1.1.1 a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lar_N 0.58 45.0 3.42e-01 83.9% 79.6%
3272897 2492.1.1.11 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NPL4 0.58 49.0 3.86e-01 94.6% 58.5%
3258586 2003.1.5.254 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Bin3, Methyltransf_12 0.58 47.0 3.47e-01 88.2% 95.6%
5069250 7601.1.1.1 a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lar_N 0.57 44.0 3.29e-01 84.9% 78.4%
3630392 7518.1.1.1 a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.56 41.0 3.69e-01 78.5% 87.2%
4947614 304.130.1.1 a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.56 34.0 3.49e-01 76.3% 62.2%
3284239 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.55 44.0 3.56e-01 86.0% 74.4%
3892927 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.55 40.0 2.79e-01 77.4% 48.6%
4030832 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.55 41.0 2.93e-01 77.4% 84.8%
3368032 2006.1.6.13 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_3 0.55 39.0 3.13e-01 74.2% 92.8%
3289025 7581.1.1.12 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › ACP_syn_III_C 0.55 40.0 3.57e-01 76.3% 76.3%
4989148 7518.1.1.1 a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.55 41.0 3.71e-01 80.6% 97.0%
3402267 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.54 41.0 3.65e-01 80.6% 94.1%
5067350 7518.1.1.0 a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like 0.54 40.0 3.95e-01 80.6% 96.2%
4960637 327.7.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.53 44.0 4.48e-01 92.5% 91.1%
3667891 2006.1.6.13 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_3 0.53 38.0 2.99e-01 76.3% 97.6%
4159886 3541.1.1.1 beta sandwiches › Atg29-Atg31 › Atg29-Atg31 › Atg29-Atg31 › ATG31 0.53 40.0 3.54e-01 81.7% 56.5%
4936770 7518.1.1.3 a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › DACZ_N 0.52 41.0 3.77e-01 87.1% 92.8%
369229 3535.1.1.1 a+b two layers › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › CamS 0.52 41.0 3.82e-01 95.7% 66.7%
3295391 2007.2.3.9 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase 0.52 40.0 2.79e-01 86.0% 78.6%
4320667 314.1.1.11 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.51 39.0 3.14e-01 84.9% 78.6%
4140531 5051.1.1.10 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.51 41.0 2.68e-01 90.3% 85.4%
4065547 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.51 38.0 2.76e-01 79.6% 88.1%
5070667 2003.1.5.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.51 42.0 3.04e-01 89.2% 49.6%
4959333 2006.1.6.12 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 0.50 36.0 2.95e-01 75.3% 97.3%
3956202 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.50 39.0 2.81e-01 83.9% 57.2%
4000395 2007.1.1.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.50 36.0 2.90e-01 77.4% 96.2%