←Back to structures
MN698247.1__QGZ18241.1__HTVC115P_gp06__00006
Bact-VirMN698247.1__QGZ18241.1__HTVC115P_gp06__00006
Identity
- Accession:
- MN698247 ↗
- Kingdom:
- phage
Quality
81.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-62
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dd5A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.90 | 63.0 | 4.97e-01 | 71.7% | 42.2% |
| 2cazD00 | 6.10.140.820 | Special › Helix non-globular › Helix Hairpins › | 0.79 | 56.0 | 5.64e-01 | 75.0% | 78.3% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.76 | 71.0 | 5.55e-01 | 100.0% | 93.2% |
| 5xnyA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.75 | 50.0 | 4.15e-01 | 70.0% | 39.3% |
| 2cr7A01 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.74 | 57.0 | 5.69e-01 | 91.7% | 79.4% |
| 3ed5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.70 | 57.0 | 5.06e-01 | 86.7% | 70.2% |
| 2ld7B00 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.70 | 56.0 | 5.17e-01 | 88.3% | 69.3% |
| 3h20A04 | 1.10.1240.50 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.68 | 56.0 | 5.01e-01 | 95.0% | 62.9% |
| 3qnmA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.68 | 54.0 | 4.74e-01 | 86.7% | 68.9% |
| 1kmiZ02 | 1.10.287.500 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.68 | 48.0 | 3.69e-01 | 75.0% | 34.3% |
| 1vbgA04 | 1.10.189.10 | Mainly Alpha › Orthogonal Bundle › Pyruvate Phosphate di-kinase; domain 2 › Pyruvate Phosphate Dikinase, domain 2 | 0.68 | 51.0 | 5.01e-01 | 80.0% | 95.2% |
| 6humG01 | 1.20.120.1200 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ | 0.67 | 53.0 | 3.92e-01 | 86.7% | 40.6% |
| 1ydxA02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.67 | 47.0 | 4.16e-01 | 75.0% | 54.4% |
| 3mvpA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.67 | 49.0 | 5.39e-01 | 76.7% | 100.0% |
| 3zc0D00 | 1.20.58.2140 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 59.0 | 4.20e-01 | 100.0% | 54.5% |
| 1e2aA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.67 | 59.0 | 4.96e-01 | 100.0% | 90.2% |
| 2pihA00 | 1.20.1500.10 | Mainly Alpha › Up-down Bundle › YheA-like fold › YheA/YmcA-like | 0.67 | 46.0 | 3.64e-01 | 71.7% | 35.0% |
| 3lnnB03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.66 | 46.0 | 4.50e-01 | 73.3% | 94.0% |
| 4m7cB00 | 1.25.40.210 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Telomere repeat-binding factor, dimerisation domain | 0.66 | 59.0 | 4.08e-01 | 98.3% | 89.9% |
| 2h7bA01 | 1.20.120.1110 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › TAFH/NHR1 domain | 0.65 | 53.0 | 4.56e-01 | 93.3% | 56.2% |
| 4jykA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.64 | 52.0 | 5.35e-01 | 96.7% | 93.1% |
| 7kypB01 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.63 | 54.0 | 3.52e-01 | 98.3% | 70.4% |
| 2xppA00 | 1.20.930.10 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.63 | 56.0 | 4.31e-01 | 100.0% | 51.8% |
| 1zzpA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.62 | 52.0 | 4.36e-01 | 96.7% | 82.6% |
| 3t6aA00 | 1.10.840.10 | Mainly Alpha › Orthogonal Bundle › Son of Sevenless (SoS) protein; Chain S, domain 2 › Ras guanine-nucleotide exchange factors catalytic domain | 0.60 | 52.0 | 3.38e-01 | 100.0% | 66.6% |
| 3vfzB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 39.0 | 3.90e-01 | 83.3% | 65.1% |
| 1wlmA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.59 | 43.0 | 3.67e-01 | 80.0% | 53.4% |
| 3g2eB00 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.58 | 48.0 | 3.55e-01 | 100.0% | 93.0% |
| 4l7nA01 | 1.20.142.10 | Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain | 0.58 | 47.0 | 3.70e-01 | 96.7% | 39.9% |
| 2mbfA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 47.0 | 4.06e-01 | 91.7% | 60.8% |
| 1ohcA02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.57 | 48.0 | 3.60e-01 | 100.0% | 80.5% |
| 2imgA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.57 | 47.0 | 3.68e-01 | 100.0% | 96.6% |
| 2nsfA01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.57 | 49.0 | 3.67e-01 | 100.0% | 56.6% |
| 3cnhB02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.57 | 42.0 | 4.14e-01 | 88.3% | 73.5% |
| 3on3B00 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.56 | 44.0 | 3.34e-01 | 93.3% | 90.9% |
| 3ck6C02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.55 | 46.0 | 3.81e-01 | 100.0% | 81.5% |
| 1dnpA02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.55 | 43.0 | 3.51e-01 | 90.0% | 46.3% |
| 3h5qA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.55 | 42.0 | 4.04e-01 | 86.7% | 71.4% |
| 2raaA00 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.51 | 41.0 | 3.03e-01 | 93.3% | 31.5% |
| 3tjmA02 | 1.10.1470.20 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 | 0.50 | 38.0 | 3.48e-01 | 88.3% | 58.9% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5043880 | 605.4.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein | 0.87 | 61.0 | 5.28e-01 | 71.7% | 52.9% |
| 4970117 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.85 | 62.0 | 5.32e-01 | 100.0% | 51.1% |
| 5074942 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.85 | 64.0 | 5.89e-01 | 95.0% | 64.0% |
| 5030797 | 101.1.11.2 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 | 0.83 | 67.0 | 5.77e-01 | 100.0% | 57.8% |
| 3735607 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.82 | 57.0 | 5.18e-01 | 73.3% | 57.5% |
| 4992849 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.82 | 66.0 | 5.96e-01 | 100.0% | 65.0% |
| 4419476 | 4958.1.1.1 ↗ | a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 0.82 | 66.0 | 4.60e-01 | 85.0% | 56.0% |
| 4993165 | 101.1.11.203 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 | 0.82 | 66.0 | 5.57e-01 | 100.0% | 54.7% |
| 4018207 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.81 | 74.0 | 5.29e-01 | 100.0% | 75.2% |
| 4992556 | 101.1.11.203 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 | 0.81 | 65.0 | 5.32e-01 | 100.0% | 49.5% |
| 4992527 | 101.1.11.203 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 | 0.80 | 64.0 | 5.80e-01 | 100.0% | 65.0% |
| 3735404 | 192.15.1.3 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Vps23_core | 0.79 | 56.0 | 4.03e-01 | 75.0% | 27.9% |
| 4970237 | 101.1.1.371 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 | 0.77 | 53.0 | 5.96e-01 | 86.7% | 97.8% |
| 4971448 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.76 | 60.0 | 5.61e-01 | 100.0% | 69.3% |
| 3974625 | 5086.1.1.84 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND | 0.75 | 52.0 | 4.92e-01 | 75.0% | 61.4% |
| 3982740 | 5086.1.1.190 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › OEP | 0.71 | 49.0 | 3.37e-01 | 75.0% | 21.5% |
| 3738945 | 509.1.1.9 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH_ZNF598 | 0.70 | 57.0 | 5.08e-01 | 96.7% | 63.5% |
| 3289392 | 3978.1.1.1 ↗ | alpha complex topology › Integral membrane Acyl-CoA desaturase › Integral membrane Acyl-CoA desaturase › Integral membrane Acyl-CoA desaturase › FA_desaturase | 0.69 | 61.0 | 3.79e-01 | 98.3% | 59.7% |
| 3560925 | 604.1.1.20 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › AKNA | 0.69 | 60.0 | 4.93e-01 | 98.3% | 87.3% |
| 4030833 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.68 | 62.0 | 4.08e-01 | 98.3% | 50.2% |
| 3304429 | 604.9.1.0 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 | 0.67 | 59.0 | 5.75e-01 | 100.0% | 90.8% |
| 5032990 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.67 | 51.0 | 4.91e-01 | 90.0% | 72.9% |
| 3485423 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.66 | 55.0 | 3.68e-01 | 98.3% | 88.5% |
| 3676147 | 198.1.1.1 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 | 0.66 | 51.0 | 4.62e-01 | 90.0% | 62.5% |
| 5080157 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.65 | 52.0 | 4.99e-01 | 90.0% | 78.6% |
| 142836 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.65 | 57.0 | 3.80e-01 | 98.3% | 50.2% |
| 5025122 | 3932.1.1.0 ↗ | alpha bundles › CRISPR/Cas system-associated protein Csm6 6H domain › CRISPR/Cas system-associated protein Csm6 6H domain › CRISPR/Cas system-associated protein Csm6 6H domain | 0.64 | 53.0 | 4.63e-01 | 95.0% | 61.1% |
| 3291371 | 5050.1.1.60 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_3 | 0.63 | 57.0 | 3.94e-01 | 100.0% | 51.8% |
| 4973028 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 54.0 | 4.97e-01 | 100.0% | 88.7% |
| 3968917 | 5050.1.1.60 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_3 | 0.63 | 56.0 | 3.85e-01 | 100.0% | 50.2% |
| 3990896 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.63 | 54.0 | 3.73e-01 | 100.0% | 70.5% |
| 3616807 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.62 | 55.0 | 3.73e-01 | 100.0% | 44.4% |
| 5005176 | 604.15.1.0 ↗ | alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like | 0.61 | 55.0 | 5.37e-01 | 100.0% | 98.5% |
| 3279460 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.61 | 54.0 | 3.74e-01 | 100.0% | 50.2% |
| 169082 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.60 | 42.0 | 2.87e-01 | 75.0% | 51.5% |
| 3962835 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.59 | 53.0 | 3.62e-01 | 100.0% | 46.8% |
| 3246144 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.58 | 45.0 | 4.09e-01 | 88.3% | 89.4% |
| 4626177 | 101.32.1.0 ↗ | alpha arrays › HTH › bacterioferritin-associated ferredoxin › bacterioferritin-associated ferredoxin | 0.56 | 50.0 | 4.52e-01 | 100.0% | 88.7% |
| 4456736 | 610.3.1.1 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey | 0.54 | 41.0 | 3.09e-01 | 90.0% | 32.6% |
| 4062015 | 304.8.1.53 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GlnD_5th | 0.50 | 43.0 | 3.14e-01 | 95.0% | 36.1% |