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MN698247.1__QGZ18263.1__HTVC115P_gp28__00028

Bact-Vir

MN698247.1__QGZ18263.1__HTVC115P_gp28__00028

Identity

Accession:
MN698247 ↗
Kingdom:
phage

Quality

85.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pelagibacter_phage_HTVC115P

TaxID: 2686463

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-84
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2looA02 1.10.10.1740 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Transmembrane protein 14-like 0.67 36.0 3.73e-01 84.1% 56.0%
4o1pD02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.61 48.0 3.40e-01 100.0% 28.2%
2fsjA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 47.0 3.95e-01 85.4% 63.0%
3r4iA02 6.10.140.960 Special › Helix non-globular › Helix Hairpins › 0.57 27.0 3.18e-01 98.8% 63.3%
3tbiB02 6.10.140.1670 Special › Helix non-globular › Helix Hairpins › 0.55 41.0 3.92e-01 81.7% 69.0%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.54 48.0 3.47e-01 100.0% 53.8%
1ywqA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.54 42.0 3.21e-01 84.1% 68.8%
2gslF00 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.54 47.0 4.09e-01 98.8% 86.6%
1gkuB06 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.53 46.0 3.82e-01 98.8% 98.1%
4ys0A02 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.52 38.0 3.02e-01 76.8% 78.8%
6ui4A01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.52 33.0 3.27e-01 87.8% 60.2%
2vrnA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.51 38.0 3.06e-01 82.9% 87.6%
3graA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.51 38.0 3.07e-01 82.9% 84.9%
5jazA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.50 41.0 4.04e-01 100.0% 82.4%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3221366 101.1.2.281 ↗ alpha arrays › HTH › HTH › winged helix domain › Tfb2 0.72 26.0 3.02e-01 73.2% 45.0%
4973072 3352.1.1.0 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain 0.59 43.0 2.92e-01 79.3% 47.8%
4299003 2498.1.1.103 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SpoVR 0.58 39.0 2.76e-01 82.9% 21.5%
5061540 2498.1.1.147 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DUF7897 0.58 51.0 3.41e-01 100.0% 73.3%
3413227 5054.1.1.59 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 0.57 42.0 2.89e-01 97.6% 22.9%
3883917 5081.1.1.1 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.55 44.0 3.33e-01 87.8% 55.0%
3269516 102.1.1.41 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › EME1-MUS81_C 0.54 32.0 3.05e-01 78.0% 48.4%
3814043 101.1.10.21 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N,Cyclin_C 0.54 45.0 3.22e-01 95.1% 47.9%
4885968 2008.1.1.203 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UvrD-helicase, AAA_19, UvrD_C 0.53 40.0 2.31e-01 82.9% 16.1%
3421663 502.1.1.1 ↗ a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C 0.53 35.0 3.72e-01 79.3% 78.6%
3431805 5081.1.1.4 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DUF1751 0.53 41.0 3.21e-01 84.1% 57.2%
4190838 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.52 32.0 3.01e-01 85.4% 50.0%
3929433 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.51 34.0 3.05e-01 78.0% 50.9%
3856302 5081.1.1.1 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.51 36.0 2.80e-01 74.4% 57.5%
3202208 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.50 40.0 3.23e-01 85.4% 46.0%
None — 0.50 37.0 2.19e-01 84.1% 16.2%
4116972 375.1.9.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase 0.50 37.0 3.63e-01 81.7% 72.6%