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MN703407.1__QGZ16672.1__PBI_LEAF_24__00024
Bact-VirMN703407.1__QGZ16672.1__PBI_LEAF_24__00024
Identity
- Accession:
- MN703407 ↗
- Kingdom:
- phage
Quality
67.4
mean pLDDT
Taxonomy
TaxID: 2686087
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 63-112
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.67 | 47.0 | 3.02e-01 | 96.0% | 15.5% |
| 2ia7A00 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 42.0 | 3.27e-01 | 72.0% | 30.6% |
| 5cm2Z00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.63 | 41.0 | 2.79e-01 | 74.0% | 17.9% |
| 2krtA01 | 3.10.450.270 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 43.0 | 3.42e-01 | 72.0% | 68.0% |
| 4a55A01 | 3.10.20.770 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.62 | 42.0 | 2.61e-01 | 72.0% | 11.6% |
| 2kqfA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.60 | 40.0 | 3.33e-01 | 74.0% | 35.4% |
| 1jpyX00 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.59 | 42.0 | 3.25e-01 | 100.0% | 32.5% |
| 2kf2A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.59 | 37.0 | 2.68e-01 | 74.0% | 19.2% |
| 3j7aV00 | 2.40.50.1000 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 49.0 | 3.52e-01 | 98.0% | 42.5% |
| 3aonA00 | 1.10.287.3240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 38.0 | 2.70e-01 | 72.0% | 19.1% |
| 2uz0A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 38.0 | 2.43e-01 | 70.0% | 23.7% |
| 4cbgD02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 44.0 | 3.21e-01 | 94.0% | 94.4% |
| 3ttqA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.55 | 43.0 | 2.81e-01 | 100.0% | 18.1% |
| 2z17A00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.55 | 38.0 | 3.17e-01 | 84.0% | 39.4% |
| 3bzwF00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.53 | 40.0 | 2.70e-01 | 90.0% | 18.1% |
| 3kk7A01 | 3.30.420.400 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.52 | 37.0 | 2.99e-01 | 76.0% | 72.5% |
| 4k3cA01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.51 | 35.0 | 3.07e-01 | 74.0% | 42.7% |
| 7o4xA01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 36.0 | 2.95e-01 | 78.0% | 68.7% |
| 4kt5C00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 33.0 | 2.85e-01 | 74.0% | 34.1% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5052173 | 361.1.1.0 ↗ | few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain | 0.84 | 75.0 | 6.54e-01 | 100.0% | 66.7% |
| 3295391 | 2007.2.3.9 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase | 0.73 | 50.0 | 3.01e-01 | 72.0% | 10.4% |
| 3484809 | 4096.1.1.1 ↗ | a+b two layers › NAP-like › NAP-like › NAP-like › NAP | 0.73 | 49.0 | 3.53e-01 | 72.0% | 25.0% |
| 3923319 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.73 | 49.0 | 3.14e-01 | 80.0% | 14.9% |
| 3608646 | 4096.1.1.1 ↗ | a+b two layers › NAP-like › NAP-like › NAP-like › NAP | 0.69 | 57.0 | 3.53e-01 | 92.0% | 42.2% |
| 4054285 | 5.1.4.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 | 0.68 | 44.0 | 2.52e-01 | 74.0% | 6.6% |
| 3343334 | 101.1.2.98 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1 | 0.64 | 42.0 | 3.12e-01 | 74.0% | 23.4% |
| 3370992 | 304.48.1.21 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Thg1,Thg1C | 0.64 | 41.0 | 2.40e-01 | 76.0% | 7.2% |
| 3702410 | 4096.1.1.1 ↗ | a+b two layers › NAP-like › NAP-like › NAP-like › NAP | 0.62 | 52.0 | 3.29e-01 | 96.0% | 50.9% |
| 4022589 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.62 | 48.0 | 3.21e-01 | 90.0% | 82.2% |
| 3558274 | 4096.1.1.1 ↗ | a+b two layers › NAP-like › NAP-like › NAP-like › NAP | 0.61 | 52.0 | 3.24e-01 | 96.0% | 51.0% |
| 4309308 | 275.1.1.0 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | 0.61 | 47.0 | 4.13e-01 | 98.0% | 55.0% |
| 3309384 | 9.13.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › Dirigent | 0.61 | 43.0 | 3.27e-01 | 74.0% | 42.0% |
| 3728856 | 171.1.1.9 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3, Ribonucleas_3_3 | 0.60 | 48.0 | 3.18e-01 | 90.0% | 80.0% |
| 3670739 | 101.1.2.98 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1 | 0.60 | 41.0 | 2.95e-01 | 70.0% | 31.2% |
| 3734626 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.60 | 47.0 | 3.14e-01 | 90.0% | 79.5% |
| 4662669 | 207.1.1.139 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_5, LRR_6, LRR_8 | 0.60 | 43.0 | 2.62e-01 | 78.0% | 24.9% |
| 3931635 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.59 | 38.0 | 3.40e-01 | 74.0% | 44.0% |
| 3665317 | 101.1.2.98 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1 | 0.58 | 40.0 | 3.01e-01 | 70.0% | 37.0% |
| 4228114 | 207.1.1.130 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_5, LRR_8 | 0.58 | 42.0 | 2.56e-01 | 78.0% | 25.5% |
| 3579667 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.57 | 40.0 | 2.99e-01 | 76.0% | 31.1% |
| 3274048 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.57 | 43.0 | 3.40e-01 | 82.0% | 62.1% |
| 4078162 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 42.0 | 3.78e-01 | 82.0% | 85.1% |
| 3996931 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 36.0 | 3.44e-01 | 86.0% | 52.3% |
| 3595936 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 42.0 | 2.59e-01 | 86.0% | 27.1% |
| 3684989 | 101.26.1.2 ↗ | alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › HTH_44 | 0.55 | 42.0 | 3.29e-01 | 94.0% | 65.0% |
| 3582597 | 11.1.1.672 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MBTPS1_3rd | 0.55 | 43.0 | 3.72e-01 | 90.0% | 83.5% |
| 5042583 | 10.3.1.0 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like | 0.55 | 41.0 | 3.44e-01 | 84.0% | 61.1% |
| 5047069 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 42.0 | 2.82e-01 | 92.0% | 53.0% |
| 4016551 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.54 | 37.0 | 2.13e-01 | 72.0% | 60.6% |
| 4134015 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.54 | 41.0 | 3.01e-01 | 88.0% | 41.3% |
| 3305241 | 2003.1.5.153 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT, Methyltransf_25 | 0.53 | 39.0 | 2.66e-01 | 78.0% | 77.8% |
| 3701672 | 2004.1.1.26 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin | 0.52 | 36.0 | 2.65e-01 | 92.0% | 22.9% |
| 5019603 | 3010.1.1.0 ↗ | a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains | 0.52 | 40.0 | 3.46e-01 | 96.0% | 61.1% |
| 5053534 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.51 | 37.0 | 2.34e-01 | 88.0% | 24.5% |
| 5007619 | 3010.1.1.2 ↗ | a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › Lon_C | 0.51 | 38.0 | 3.19e-01 | 94.0% | 77.3% |
| 3493726 | 59.1.1.7 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Tau95_N | 0.50 | 40.0 | 3.32e-01 | 94.0% | 58.0% |
| 4508433 | 314.1.1.3 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d | 0.50 | 38.0 | 2.36e-01 | 90.0% | 36.6% |