←Back to structures

MN703407.1__QGZ16676.1__PBI_LEAF_28__00028

Bact-Vir

MN703407.1__QGZ16676.1__PBI_LEAF_28__00028

Identity

Accession:
MN703407 ↗
Kingdom:
phage

Quality

73.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rogerhendrixvirus› Microbacterium_phage_Leaf

TaxID: 2686087

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-74
PDB
Domain cluster: rep: MN062720.1__QDP45557.1__SEA_FUZZBUSTER_73__00073__D27-85
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fmaA00 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.74 40.0 3.89e-01 74.3% 49.4%
3purA02 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.66 38.0 2.53e-01 75.7% 13.7%
1tbrR01 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.58 35.0 4.08e-01 91.9% 88.2%
4gi3C00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.57 34.0 3.77e-01 90.5% 75.4%
2incA00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.56 41.0 2.55e-01 78.4% 58.9%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.56 37.0 3.71e-01 74.3% 65.8%
2innB00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.56 41.0 2.52e-01 78.4% 58.6%
2onsA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 45.0 3.76e-01 98.6% 88.1%
3i6sA03 3.50.30.30 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › 0.53 36.0 3.11e-01 73.0% 100.0%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.52 35.0 3.29e-01 75.7% 54.2%
6kbrC00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.52 33.0 3.64e-01 90.5% 87.3%
2dk6A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.52 35.0 3.35e-01 71.6% 83.0%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 33.0 3.07e-01 100.0% 50.0%
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 3.65e-01 74.3% 76.5%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4964347 904.1.1.55 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › PF26046 0.78 45.0 5.62e-01 98.6% 95.6%
4024679 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.76 40.0 4.45e-01 73.0% 65.0%
3924848 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.73 40.0 4.07e-01 75.7% 54.7%
4028910 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.71 39.0 4.15e-01 74.3% 61.5%
3328353 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.70 39.0 4.26e-01 75.7% 66.7%
4994 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.69 38.0 3.80e-01 75.7% 51.3%
3574017 822.1.1.2 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.69 38.0 3.93e-01 75.7% 57.1%
3930342 822.1.1.2 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.68 38.0 4.28e-01 74.3% 72.7%
3444777 822.1.1.0 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.68 38.0 4.26e-01 74.3% 72.7%
3430912 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.68 45.0 5.07e-01 93.2% 92.7%
3353030 822.1.1.2 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.67 38.0 3.44e-01 77.0% 41.0%
3458276 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.67 37.0 3.94e-01 74.3% 61.5%
3333626 822.1.1.0 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.67 37.0 4.08e-01 75.7% 66.7%
3400250 379.1.1.3 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.66 36.0 4.25e-01 74.3% 78.0%
3794544 376.1.1.115 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ, zf-Di19 0.64 49.0 3.87e-01 100.0% 38.7%
3874505 379.1.1.1 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 0.63 35.0 4.41e-01 78.4% 100.0%
3601028 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.62 44.0 4.75e-01 100.0% 95.0%
3827574 822.1.1.0 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.62 35.0 3.84e-01 75.7% 68.3%
3738154 3351.1.1.1 ↗ a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.62 37.0 3.10e-01 100.0% 35.2%
3620500 379.1.1.3 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.61 39.0 4.52e-01 79.7% 96.0%
4961835 377.9.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like 0.60 43.0 4.40e-01 100.0% 78.1%
4158495 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.58 37.0 3.56e-01 75.7% 53.3%
3407960 109.4.1.2423 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS1_R4, INTS1_INTS2-bd 0.57 46.0 2.84e-01 89.2% 30.8%
3846535 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.57 41.0 3.88e-01 77.0% 82.2%
3620492 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.56 36.0 4.13e-01 94.6% 98.0%
3928303 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.56 42.0 4.48e-01 100.0% 92.3%
3617714 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.54 38.0 3.87e-01 75.7% 96.0%
3581513 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.54 38.0 3.75e-01 74.3% 88.7%
3930427 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.54 36.0 3.79e-01 70.3% 78.5%
3502158 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.53 38.0 2.96e-01 75.7% 40.6%
1003912 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.52 35.0 3.29e-01 75.7% 54.2%
3881492 109.4.1.411 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TTC3_DZIP3_dom 0.52 44.0 3.02e-01 100.0% 25.8%
3411827 379.1.1.3 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.51 34.0 3.62e-01 94.6% 78.5%
3926235 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 39.0 3.82e-01 97.3% 78.8%
4863675 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.51 34.0 3.18e-01 71.6% 75.2%