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MN703407.1__QGZ16754.1__PBI_LEAF_107__00107
Bact-VirMN703407.1__QGZ16754.1__PBI_LEAF_107__00107
Identity
- Accession:
- MN703407 ↗
- Kingdom:
- phage
Quality
82.4
mean pLDDT
Taxonomy
TaxID: 2686087
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 29-101
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ek0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.66 | 39.0 | 3.65e-01 | 89.0% | 45.6% |
| 3ub1A01 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.66 | 48.0 | 3.81e-01 | 86.3% | 40.4% |
| 4f0aB02 | 3.30.2460.20 | Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Wnt (Wingless and Int-1), C-terminal domain | 0.63 | 42.0 | 4.37e-01 | 86.3% | 73.5% |
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.59 | 35.0 | 3.61e-01 | 100.0% | 60.6% |
| 2azeB00 | 6.10.250.540 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.58 | 28.0 | 2.54e-01 | 95.9% | 31.7% |
| 4tw1B00 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.57 | 48.0 | 3.23e-01 | 93.2% | 76.6% |
| 1l3iA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 36.0 | 2.69e-01 | 90.4% | 26.5% |
| 2d9wA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 32.0 | 2.82e-01 | 87.7% | 37.3% |
| 3ks7A02 | 2.60.120.230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 40.0 | 3.10e-01 | 83.6% | 81.6% |
| 2obaA00 | 3.30.479.10 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD | 0.52 | 41.0 | 3.53e-01 | 87.7% | 87.5% |
| 1l3aA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.51 | 36.0 | 2.79e-01 | 93.2% | 33.1% |
| 2hj1A00 | 3.10.20.280 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like | 0.51 | 28.0 | 2.76e-01 | 87.7% | 48.1% |
| 3ddcB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.50 | 39.0 | 3.24e-01 | 97.3% | 45.9% |
| 2rs7A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.50 | 31.0 | 3.11e-01 | 91.8% | 59.5% |
| 2q2eB05 | 2.60.40.2960 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 31.0 | 2.89e-01 | 86.3% | 49.5% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1582440 | 218.1.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like | 0.61 | 41.0 | 3.52e-01 | 90.4% | 44.2% |
| 4538250 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.58 | 39.0 | 3.25e-01 | 94.5% | 37.8% |
| 5052927 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 32.0 | 2.65e-01 | 83.6% | 28.1% |
| 329607 | 5084.5.1.4 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD | 0.57 | 31.0 | 3.46e-01 | 80.8% | 67.3% |
| 4856794 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.56 | 31.0 | 3.07e-01 | 87.7% | 49.4% |
| 3761138 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.56 | 35.0 | 2.93e-01 | 100.0% | 40.0% |
| 973647 | 11.13.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › Leukocidin | 0.56 | 43.0 | 3.06e-01 | 84.9% | 78.7% |
| 3601924 | 511.1.1.0 ↗ | beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain | 0.56 | 44.0 | 3.35e-01 | 86.3% | 67.4% |
| 3788285 | 395.1.1.4 ↗ | few secondary structure elements › Midkine-related › Midkine-related › Midkine-related › Flocculin_t3 | 0.56 | 35.0 | 3.95e-01 | 86.3% | 92.0% |
| 5034346 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.54 | 29.0 | 1.87e-01 | 82.2% | 10.5% |
| 3413287 | 11.1.1.796 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Shg | 0.54 | 34.0 | 2.74e-01 | 87.7% | 29.0% |
| 3967397 | 7503.1.1.8 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › DUF4136 | 0.54 | 47.0 | 3.77e-01 | 100.0% | 63.3% |
| 4941424 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.53 | 39.0 | 2.54e-01 | 80.8% | 83.2% |
| 4989866 | 205.1.1.17 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_11 | 0.53 | 37.0 | 2.72e-01 | 74.0% | 56.8% |
| 4968312 | 2484.1.1.66 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 | 0.53 | 40.0 | 2.79e-01 | 90.4% | 27.1% |
| 2997715 | 11.13.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › Leukocidin | 0.52 | 40.0 | 2.75e-01 | 84.9% | 65.2% |
| 4929832 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.52 | 41.0 | 3.74e-01 | 100.0% | 63.5% |
| 4459947 | 230.1.1.0 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like | 0.52 | 42.0 | 3.29e-01 | 89.0% | 69.7% |
| 5059784 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.51 | 40.0 | 3.80e-01 | 86.3% | 74.4% |
| 3268685 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.51 | 45.0 | 3.55e-01 | 100.0% | 92.9% |
| 3741170 | 2011.1.1.8 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 | 0.50 | 39.0 | 2.59e-01 | 86.3% | 29.2% |
| 3973035 | 2011.1.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases | 0.50 | 37.0 | 2.36e-01 | 80.8% | 52.0% |
| 3839919 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.50 | 40.0 | 2.90e-01 | 91.8% | 29.7% |
| 3982740 | 5086.1.1.190 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › OEP | 0.50 | 30.0 | 2.21e-01 | 78.1% | 22.0% |
| 3397147 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.50 | 45.0 | 3.59e-01 | 100.0% | 93.8% |