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MN703407.1__QGZ16804.1__PBI_LEAF_70__00070
Bact-VirMN703407.1__QGZ16804.1__PBI_LEAF_70__00070
Identity
- Accession:
- MN703407 ↗
- Kingdom:
- phage
Quality
79.3
mean pLDDT
Taxonomy
TaxID: 2686087
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-50
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sg7A00 | 1.10.1740.70 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB | 0.75 | 45.0 | 3.94e-01 | 81.6% | 38.7% |
| 2yqyA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.70 | 57.0 | 4.41e-01 | 100.0% | 96.0% |
| 1ydxA02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.70 | 47.0 | 3.89e-01 | 71.4% | 81.1% |
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.70 | 47.0 | 4.17e-01 | 71.4% | 50.7% |
| 3tklB01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 44.0 | 4.04e-01 | 71.4% | 51.6% |
| 3l9fA02 | 6.10.140.1570 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 46.0 | 3.96e-01 | 71.4% | 44.4% |
| 4abxA02 | 6.10.140.1090 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 46.0 | 3.83e-01 | 71.4% | 49.4% |
| 3gnlB02 | 1.10.287.1890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.67 | 45.0 | 4.09e-01 | 71.4% | 52.9% |
| 2uyyA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.66 | 45.0 | 3.41e-01 | 71.4% | 31.7% |
| 4ikhA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.66 | 45.0 | 3.33e-01 | 71.4% | 39.4% |
| 2x9xA04 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 45.0 | 4.37e-01 | 71.4% | 74.1% |
| 1vf7A03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.65 | 44.0 | 4.18e-01 | 71.4% | 65.0% |
| 4cqiA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 44.0 | 3.42e-01 | 71.4% | 43.0% |
| 2lw1A00 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.64 | 43.0 | 3.63e-01 | 71.4% | 74.1% |
| 3e46A02 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.63 | 41.0 | 4.28e-01 | 75.5% | 76.7% |
| 3ttvA02 | 1.20.1370.20 | Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › Catalase, four-helical domain | 0.63 | 43.0 | 3.45e-01 | 71.4% | 37.5% |
| 2kjgA00 | 1.20.120.970 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.62 | 48.0 | 3.93e-01 | 87.8% | 69.7% |
| 2lf0A01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.62 | 42.0 | 4.01e-01 | 71.4% | 68.3% |
| 8igrI01 | 2.40.270.10 | Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 | 0.62 | 45.0 | 3.02e-01 | 83.7% | 21.6% |
| 1m0wA03 | 1.10.1080.10 | Mainly Alpha › Orthogonal Bundle › Glutathione Synthetase; Chain A, domain 3 › Glutathione Synthetase; Chain A, domain 3 | 0.61 | 47.0 | 3.92e-01 | 83.7% | 84.7% |
| 2rp4A00 | 6.10.280.60 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain | 0.61 | 41.0 | 3.73e-01 | 71.4% | 49.3% |
| 4yzgA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.61 | 50.0 | 3.15e-01 | 98.0% | 94.2% |
| 1wp7A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.61 | 42.0 | 3.90e-01 | 73.5% | 100.0% |
| 2whnA00 | 1.20.81.30 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F | 0.60 | 43.0 | 3.36e-01 | 77.6% | 38.2% |
| 1lrzA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 40.0 | 3.76e-01 | 71.4% | 56.5% |
| 2gxaE01 | 1.10.10.510 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain | 0.59 | 42.0 | 3.81e-01 | 83.7% | 53.4% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.59 | 40.0 | 3.68e-01 | 71.4% | 94.0% |
| 1o82A00 | 1.20.225.10 | Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Bacteriocin AS-48 | 0.59 | 48.0 | 4.37e-01 | 95.9% | 70.0% |
| 3nuwA02 | 3.30.420.310 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain | 0.59 | 49.0 | 3.31e-01 | 98.0% | 27.3% |
| 1a36A04 | 1.10.132.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.59 | 40.0 | 2.80e-01 | 75.5% | 20.6% |
| 1fuyB01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 48.0 | 3.31e-01 | 89.8% | 29.9% |
| 1bhaA00 | 1.10.287.170 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 40.0 | 3.64e-01 | 73.5% | 53.7% |
| 3lnnB03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.57 | 39.0 | 3.60e-01 | 73.5% | 68.7% |
| 3eupB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 50.0 | 3.33e-01 | 100.0% | 34.5% |
| 4l8jA04 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.56 | 38.0 | 3.63e-01 | 71.4% | 100.0% |
| 3ck6C02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.55 | 48.0 | 3.65e-01 | 100.0% | 77.3% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3591713 | 3184.1.1.0 ↗ | alpha bundles › mRNA 3'-end-processing protein Rna15p hinge domain › mRNA 3'-end-processing protein Rna15p hinge domain › mRNA 3'-end-processing protein Rna15p hinge domain | 0.81 | 55.0 | 5.13e-01 | 71.4% | 58.3% |
| 3299932 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.74 | 60.0 | 5.97e-01 | 91.8% | 94.0% |
| 5056476 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.73 | 51.0 | 4.38e-01 | 73.5% | 60.0% |
| 3279123 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.71 | 50.0 | 3.44e-01 | 93.9% | 21.1% |
| 3264584 | 5010.1.1.0 ↗ | extended segments › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV | 0.70 | 48.0 | 4.79e-01 | 71.4% | 78.0% |
| 4077176 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.70 | 47.0 | 3.87e-01 | 71.4% | 55.6% |
| 3969893 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.69 | 47.0 | 4.28e-01 | 71.4% | 55.4% |
| 4033259 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.67 | 53.0 | 5.15e-01 | 89.8% | 98.2% |
| 3473556 | 592.1.1.7 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › PF26091 | 0.67 | 48.0 | 4.35e-01 | 77.6% | 68.6% |
| 3168285 | 109.4.1.11 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PI3Ka | 0.67 | 45.0 | 2.97e-01 | 71.4% | 27.4% |
| 3235055 | 3065.1.1.2 ↗ | alpha bundles › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Gp-FAR-1 | 0.65 | 51.0 | 3.71e-01 | 91.8% | 77.4% |
| 3593736 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.64 | 44.0 | 3.44e-01 | 71.4% | 46.0% |
| 3284776 | 5010.1.1.0 ↗ | extended segments › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV | 0.60 | 42.0 | 4.06e-01 | 73.5% | 83.6% |
| 4983608 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.59 | 46.0 | 4.16e-01 | 83.7% | 64.6% |
| 3837881 | 103.1.1.30 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › GIP1_N | 0.59 | 44.0 | 4.59e-01 | 87.8% | 91.1% |
| 3243227 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.59 | 44.0 | 3.97e-01 | 83.7% | 91.4% |
| 2456957 | 192.13.1.1 ↗ | alpha bundles › Long alpha-hairpin › ISY1 N-terminal domain-like › ISY1 N-terminal domain-like › Isy1 | 0.58 | 39.0 | 3.83e-01 | 71.4% | 94.6% |
| 1070258 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.58 | 39.0 | 3.64e-01 | 71.4% | 95.2% |
| 3351184 | 103.1.1.87 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_At5g58720 | 0.56 | 41.0 | 4.25e-01 | 87.8% | 93.3% |
| 3283911 | 564.1.1.2 ↗ | alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › zf-HC2 | 0.55 | 36.0 | 3.66e-01 | 71.4% | 66.0% |
| 4022360 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.54 | 43.0 | 2.66e-01 | 89.8% | 90.0% |