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MN703414.1__QGZ17508.1__PBI_DEWDROP_140__00140

Bact-Vir

MN703414.1__QGZ17508.1__PBI_DEWDROP_140__00140

Identity

Accession:
MN703414 ↗
Kingdom:
phage

Quality

70.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rogerhendrixvirus› Microbacterium_phage_Dewdrop

TaxID: 2686090

Cluster

View cluster (39 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-128
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05037.19 best DUF669 36.1 9.40e-09 100.0% 81.2%
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 37.0 4.65e-01 100.0% 76.2%
3f1zI00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 53.0 5.15e-01 100.0% 70.7%
2cwaA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 54.0 5.32e-01 100.0% 77.1%
1dgsA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 48.0 5.52e-01 100.0% 100.0%
2w38A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.69 38.0 2.64e-01 95.1% 17.5%
3f2bA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 49.0 5.11e-01 100.0% 84.4%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 49.0 5.23e-01 100.0% 92.2%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 46.0 5.11e-01 100.0% 98.7%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 54.0 5.37e-01 100.0% 86.4%
2k5vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 46.0 4.69e-01 100.0% 78.6%
8aa9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 50.0 4.88e-01 100.0% 76.3%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 50.0 5.04e-01 100.0% 86.5%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 51.0 5.14e-01 100.0% 91.2%
2bn4B03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 49.0 4.21e-01 86.4% 87.3%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 49.0 4.79e-01 100.0% 84.7%
7x7zA01 2.40.480.10 Mainly Beta › Beta Barrel › AOC barrel-like › Allene oxide cyclase-like 0.58 45.0 4.13e-01 83.5% 97.1%
4bgjA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 51.0 4.90e-01 97.1% 99.2%
2vw9B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 50.0 5.00e-01 100.0% 95.2%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 49.0 4.75e-01 100.0% 86.1%
1ar0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 35.0 3.32e-01 94.2% 50.4%
3f6gA01 3.30.160.740 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 32.0 4.09e-01 96.1% 98.3%
1h6hA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 48.0 4.32e-01 94.2% 85.3%
3ulpD00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 50.0 4.88e-01 100.0% 91.2%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 34.0 3.13e-01 94.2% 46.2%
1ae2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 43.0 4.62e-01 100.0% 100.0%
1ocsA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 47.0 4.39e-01 94.2% 96.2%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 47.0 4.41e-01 94.2% 94.6%
2vl6A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 50.0 4.91e-01 100.0% 98.2%
2qiyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 34.0 3.17e-01 94.2% 47.0%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 40.0 3.41e-01 75.7% 77.7%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 46.0 4.39e-01 93.2% 92.7%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 39.0 3.53e-01 75.7% 83.8%
2i4kA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 45.0 4.22e-01 94.2% 98.4%
3hpcX00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 44.0 3.93e-01 93.2% 92.3%
3cqnB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 39.0 3.38e-01 76.7% 78.9%
7kx7A03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 35.0 2.81e-01 94.2% 34.0%
4nspA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.51 31.0 2.46e-01 95.1% 25.6%
2hqsA01 3.40.50.10070 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TolB, N-terminal domain 0.51 33.0 3.01e-01 97.1% 47.2%
3weoA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.51 45.0 3.35e-01 97.1% 90.7%
1iyxA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 41.0 3.88e-01 97.1% 72.8%
ECOD (75)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4033192 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.80 75.0 6.84e-01 100.0% 78.5%
3969377 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.78 49.0 5.68e-01 100.0% 87.8%
143390 2.24.1.1 ↗ beta barrels › OB-fold › probable receptor YhhM › probable receptor YhhM › DUF2500 0.77 50.0 5.71e-01 100.0% 89.5%
4102465 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.76 52.0 5.24e-01 100.0% 69.2%
4238204 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.73 53.0 5.31e-01 100.0% 74.3%
4932581 2.1.1.12 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.72 43.0 5.26e-01 85.4% 93.8%
5074611 2.26.1.1 ↗ beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 0.71 52.0 5.79e-01 100.0% 97.5%
5000502 2.1.1.12 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.71 42.0 4.66e-01 93.2% 72.9%
3876051 2.1.1.44 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.71 51.0 5.61e-01 100.0% 91.8%
4091312 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.70 49.0 5.30e-01 100.0% 87.1%
3497521 2.3.1.0 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like 0.70 56.0 5.19e-01 100.0% 67.7%
1954221 2.26.1.1 ↗ beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 0.70 48.0 5.49e-01 100.0% 96.0%
4957055 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.70 37.0 4.26e-01 93.2% 70.7%
3279764 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 46.0 5.42e-01 98.1% 100.0%
5032255 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 40.0 4.76e-01 92.2% 84.3%
3602923 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 48.0 4.87e-01 100.0% 74.0%
3296674 2.1.1.130 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.68 55.0 5.42e-01 100.0% 80.0%
3907754 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 51.0 5.49e-01 98.1% 95.3%
3252847 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 50.0 5.46e-01 98.1% 92.9%
3250428 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 49.0 4.41e-01 98.1% 54.5%
3314558 2.1.1.130 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.67 54.0 4.78e-01 100.0% 61.1%
3658019 2.1.1.285 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB3, CDC24_OB2 0.66 53.0 3.75e-01 100.0% 29.0%
4929168 2.3.1.0 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like 0.66 52.0 4.99e-01 100.0% 72.5%
3281268 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 45.0 4.53e-01 98.1% 68.6%
3994138 2.3.1.0 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like 0.66 58.0 4.92e-01 100.0% 60.6%
4958552 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 42.0 4.11e-01 100.0% 59.1%
152653 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.65 49.0 5.23e-01 100.0% 92.2%
5042375 2.26.1.1 ↗ beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 0.65 46.0 5.23e-01 98.1% 100.0%
4989812 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.65 34.0 4.32e-01 90.3% 86.7%
3961460 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 47.0 4.21e-01 100.0% 53.3%
4982481 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 48.0 4.99e-01 99.0% 85.3%
3374948 2.1.1.130 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.64 52.0 5.32e-01 100.0% 89.0%
3387410 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 53.0 5.12e-01 100.0% 83.5%
3375524 2.1.1.229 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 0.62 51.0 4.84e-01 100.0% 76.7%
3808110 2.1.1.130 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.61 53.0 4.65e-01 100.0% 64.0%
2541776 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.61 51.0 5.01e-01 100.0% 85.3%
3612666 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 52.0 4.83e-01 100.0% 73.8%
3550844 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.60 50.0 4.33e-01 90.3% 88.1%
4680392 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.60 51.0 5.00e-01 100.0% 86.4%
4001702 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 50.0 4.85e-01 100.0% 80.9%
3542604 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.60 48.0 4.42e-01 100.0% 66.7%
4232994 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.59 49.0 4.86e-01 100.0% 86.4%
3791987 2.1.1.25 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.59 49.0 4.80e-01 100.0% 81.7%
4124146 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.58 49.0 4.34e-01 94.2% 80.6%
3741279 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.57 49.0 4.45e-01 94.2% 88.6%
3681671 243.1.1.2 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.57 35.0 3.07e-01 94.2% 40.7%
3407245 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.57 49.0 4.63e-01 94.2% 93.6%
3926984 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.57 42.0 3.36e-01 75.7% 41.0%
3564807 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.57 48.0 4.22e-01 93.2% 78.7%
3841771 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.57 48.0 4.26e-01 93.2% 83.3%
3698360 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.57 48.0 4.13e-01 94.2% 73.5%
4026722 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.57 51.0 4.63e-01 100.0% 75.0%
3996829 243.1.1.2 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.56 35.0 3.38e-01 93.2% 54.8%
4956351 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 49.0 3.23e-01 100.0% 27.3%
3903091 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.56 47.0 3.23e-01 94.2% 32.1%
3357183 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.56 48.0 4.16e-01 94.2% 78.8%
1930750 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.56 47.0 4.13e-01 93.2% 80.0%
376 2.1.1.20 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Phage_DNA_bind 0.56 43.0 4.60e-01 99.0% 97.7%
3889571 243.1.1.2 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.56 34.0 3.24e-01 94.2% 50.4%
4333368 243.1.1.42 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MMU163 0.56 36.0 3.34e-01 95.1% 52.3%
5032193 2.26.1.1 ↗ beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 0.55 51.0 5.06e-01 99.0% 98.1%
4072295 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.55 46.0 3.17e-01 94.2% 32.7%
3781935 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.55 49.0 4.60e-01 98.1% 98.4%
3265608 243.1.1.2 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.55 34.0 3.26e-01 94.2% 53.3%
4456679 3234.1.1.2 ↗ a+b two layers › GerBC protein › GerBC protein › GerBC protein › Spore_GerAC, Spore_GerAC_N 0.55 38.0 2.70e-01 70.9% 30.6%
3882652 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 48.0 4.53e-01 100.0% 82.3%
4012805 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.55 46.0 4.33e-01 94.2% 90.0%
4355655 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.54 45.0 4.22e-01 89.3% 96.0%
4586503 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.54 46.0 4.29e-01 96.1% 99.3%
3643907 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.54 46.0 3.99e-01 95.1% 76.2%
4152544 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.53 45.0 3.97e-01 89.3% 94.5%
3180376 109.3.1.11 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_5 0.52 44.0 2.96e-01 94.2% 28.0%
4972474 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 46.0 2.82e-01 100.0% 24.3%
3443030 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 33.0 3.67e-01 97.1% 83.7%
3679001 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.51 37.0 3.06e-01 92.2% 43.0%